Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_001365.1 Length=8273 Score E Sequences producing significant alignments: (Bits) Value seq854 168 4e-38 seq228 86.0 3e-13 >seq854 Length=133846 Score = 168 bits (186), Expect = 4e-38 Identities = 158/201 (79%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 2559 AAATTCGGGTTATGTTTTTGGCG---GTGATTTACAAAATAAATATGGTTTGCAATATaa 2615 |||| || |||||||||| | || ||||| |||| ||||||||||| | ||||| Sbjct 89373 AAATAAGGATTATGTTTTTAATGAAAGTCATTTAAAAAACAAATATGGTTTAGATTATAA 89432 Query 2616 aaaaaTTGAAGAACAAAAAATCGGTTATAATGTTTTTGAATTGCAAGCACAAAAAGAGAA 2675 ||| |||||| | ||||||| || ||||||||| |||||| | ||||| |||||||| || Sbjct 89433 AAATATTGAAAAGCAAAAAAWCGATTATAATGTCTTTGAACTACAAGCTCAAAAAGAAAA 89492 Query 2676 TGATATGTACCGATATTATGATTTTAATTTTGGGATTTATAATTGACAAGAAATTAATAA 2735 ||| | || |||||| | ||||||||| || |||||||| | ||||||||||||||| Sbjct 89493 TGACGTTTATAAATATTACGGTTTTAATTTAGGAATTTATAACTAACAAGAAATTAATAA 89552 Query 2736 TGGTGGGTTGTTCCCCGATAA 2756 | || |||||||| | ||| Sbjct 89553 CGAAGGATTGTTCCCTGTTAA 89573 >seq228 Length=312174 Score = 86.0 bits (94), Expect = 3e-13 Identities = 88/114 (77%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 2079 TAAGTTTTTACAGTCGTTTTTTGCAAGTGCATTGGTGCCCGTGTTTCAAAATCGTAGTTT 2138 |||||||| | || | ||||||| |||||| || || || |||||||||||| || Sbjct 131091 TAAGTTTTAAAAG-CACTTTTTGCTCATGCATTAGTACCAGTTTTTCAAAATCGTTGTAA 131033 Query 2139 GTTTATTGAAAATGGATATATTGATAATTTACAATATGATACTGTTTTAGTTAA 2192 |||||||||| | ||| | |||| ||||| |||||||||||| ||| |||| Sbjct 131032 TTTTATTGAAAGTAATTATGTAGATACTTTACTATATGATACTGTGTTAATTAA 130979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26354623368448