Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_000936.1 Length=5454 Score E Sequences producing significant alignments: (Bits) Value seq20549 107 7e-20 >seq20549 Length=2981 Score = 107 bits (118), Expect = 7e-20 Identities = 264/391 (68%), Gaps = 12/391 (3%) Strand=Plus/Plus Query 3006 TTGGTTCATTCCACAAAAGCACACGTTTAGATGTTGCTTCTTGTAAACTGAAATTATTAG 3065 |||| |||| |||||||| |||||| || | |||| ||||| || ||||||||||| Sbjct 1958 TTGGCTCATCCCACAAAATAACACGTCTATTTATTGCATCTTGAAATGCGAAATTATTAG 2017 Query 3066 TCTTATTCATTATACCTAATTGTCCATAGTTCATTAGATAATGTAGAT--ACACATCAAA 3123 | ||||| | ||||||||||||| |||| ||||| || ||| | || || | Sbjct 2018 TTTTATTTGCTCTACCTAATTGTCCTCTATTCAAAAGATA--GTTGATGAAAACGTCCAT 2075 Query 3124 AAAGAAGTTCTTTCCTGCACTTGGAGGA-GAC--CATACACATATTGTATTACACTTTGG 3180 ||| || || ||||| |||| | |||| ||| ||| | || ||||| ||||| Sbjct 2076 AAAAAAATT-TTTCC--CACTAGAAGGAGGACTAAATAACAAAATAGTATTGGCTTTTGG 2132 Query 3181 TAATTTACGCTCAAGCACATTATAAAATGTATTTAAAAATGATTTAATCTGAACAACGTC 3240 | ||| || || | | ||||| ||||| ||||||| | | || || | |||| Sbjct 2133 AATTTTGCGTTCTAAGATGTTATACAATGTTGTTAAAAAGAAAGTTATTTGCTCTACGTT 2192 Query 3241 ATCATCAAACTGATATGCTAATAGCTTATTTAAAATTGTCAATGAATCATTAACAGAATA 3300 ||| ||||||||| | || || | ||||||| | | ||| | ||| || Sbjct 2193 ATCGTCAAACTGAAACATTAGTAAACGTTGTAAAATTTTAACTGACGAAAAGACATCGTA 2252 Query 3301 GTATTTATCTTCTAATGGTTGATAACCAGCCATAAATGTTGGATTACAATATGGTT-GTG 3359 ||||| | || | ||| ||| || || | || ||||| ||||| || || | Sbjct 2253 ATATTTCTGGTCCACTGGAATATATCCGGCAGTGAAGGTTGGGAAACAAT-TGCTTCTTT 2311 Query 3360 AATAAAAAGTATTAAAGTCATGCAAAGTCCA 3390 |||||||| |||||||||| |||||||| Sbjct 2312 TGTAAAAAGTGTTAAAGTCATATAAAGTCCA 2342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17329300800715