Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_001899.1 Length=5941 Score E Sequences producing significant alignments: (Bits) Value seq11045 170 7e-39 >seq11045 Length=5519 Score = 170 bits (188), Expect = 7e-39 Identities = 320/460 (70%), Gaps = 28/460 (6%) Strand=Plus/Plus Query 2508 TAAGTTAAATGCTTTTCTAATTATATCTCCTCCAAGTGGTGGTAAAAATTTCTTTTTTGA 2567 ||||| ||| | ||| || || |||| ||| || |||||||||||||||||||| Sbjct 2715 TAAGTGTAATACATTTTTAGTTCATTCTCGGCCATCTGCCGGTAAAAATTTCTTTTTTGA 2774 Query 2568 TATGATTTTTGGATTGTTATTATCATATGGTCAATTGGG----ACAAGCTAATAGACATA 2623 || | || ||| | ||| ||| ||| |||| ||| | ||| | ||| Sbjct 2775 TACATTATTAACATTATGTTTAAATCTTGGGCAACTGGGCACTGCAAACAAAT-CAAATA 2833 Query 2624 ACTTATTTGCTTTTCAAGAAGCTCCAAATAAACGT-GTACTAT--TATGGAATGAACCTA 2680 | |||||||||||||| ||| | || ||| | | ||| |||||||||| || | Sbjct 2834 A---TTTTGCTTTTCAAGATGCTGC---CAACCGTAGAATTATTCTATGGAATGAGCCGA 2887 Query 2681 ATTATGAAAGTTCCTTAACTGATACTATAAAAATGATGTTT---GGAGGAGATCCTTATA 2737 |||||||| | | || ||| | | |||| ||||| |||||||| | | Sbjct 2888 ATTATGAATCAAGCATGACAGATTATTTGAAAACTTTGTTTGAAGGAGGAGACAC---CA 2944 Query 2738 CTGTTAGAGTTAA-AAATCGTATGGATGCACATGTAAAGCGTACTCCTGTTATTATACTT 2796 ||||||||||| | | | | ||| | ||||||||| | || ||| |||| |||||| Sbjct 2945 AGGTTAGAGTTAAGATGTTGGGT-GATACTCATGTAAAGAGAACACCTATTATAATACTT 3003 Query 2797 ACTAATAATACTGTACCTTTTATGTATGAACTTGCTTTTAGTGATAGAATAATTCAATAT 2856 ||||||||| ||| ||||||| || |||||||| |||||||| | || ||| Sbjct 3004 ACTAATAATCACGTAAATTTTATGAGCGATGATGCTTTTAAAGATAGAATTAAGCAGTAT 3063 Query 2857 AAATGGAATGCTGCGCCATTCTTAAAGGATTATGAATTGAAACCACATCCAATGACATTT 2916 |||||||| |||| || || | || |||||| |||| |||||| ||||| || ||||| Sbjct 3064 AAATGGAAAACTGCACCTTTTCTGAAAGATTATAAATTAAAACCATATCCATTGTCATTT 3123 Query 2917 TTTC---TTTTATTAAGTAAATATAACATTACATTTTAAT 2953 |||| |||||||| |||||||| || | ||||||| Sbjct 3124 TTTCAAATTTTATTA---AAATATAAAATAAAGTTTTAAT 3160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18886667379410