Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_004284.1 Length=5908 Score E Sequences producing significant alignments: (Bits) Value seq11045 125 3e-25 >seq11045 Length=5519 Score = 125 bits (138), Expect = 3e-25 Identities = 295/435 (68%), Gaps = 28/435 (6%) Strand=Plus/Minus Query 3018 ATTAAAATGTAATATTATATTTACTCAATAAAA---GGAAAAATGTCATTGGATGTGGTT 3074 ||||||| | || |||||||| ||||||| | ||||||| || ||||| ||||| Sbjct 3160 ATTAAAACTTTATTTTATATTTT---AATAAAATTTGAAAAAATGACAATGGATATGGTT 3104 Query 3075 TCAATTCATAATCCTTTAAGAATGGCGCAGCATTCCACTTGTATTGAATAATTCTATCAC 3134 | |||| |||||| || | || || |||| ||||| || || || |||||||||| Sbjct 3103 TTAATTTATAATCTTTCAGAAAAGGTGCAGTTTTCCATTTATACTGCTTAATTCTATCTT 3044 Query 3135 TAAAAGCAGTTTCATACATAAAAGGTACAGTATTATTAGTAAGTATTATAACTGGAGTGC 3194 |||||||| || ||||||| ||| |||||||||||||||||||| || || | Sbjct 3043 TAAAAGCATCATCGCTCATAAAATTTACGTGATTATTAGTAAGTATTATAATAGGTGTTC 2984 Query 3195 GTTTTACATGTGCATCCATACGA-TTTTTAACTCTAACAGTATAAGGATCTCCTC---CA 3250 |||||||| | || || | | | ||||||||||| | | ||||||| || Sbjct 2983 TCTTTACATGAGTAT-CACCCAACATCTTAACTCTAAC---CTTGGTGTCTCCTCCTTCA 2928 Query 3251 AACATCATTTTAATTGTATCAGTTAAAGAACTCTCATAGTTAGGTTCATTCCAT--AATA 3308 |||| |||| | ||| || | ||||| || || ||||||||| |||| Sbjct 2927 AACAAAGTTTTCAAATAATCTGTCATGCTTGATTCATAATTCGGCTCATTCCATAGAATA 2868 Query 3309 ATAC-ACGTTTATTAGGTGCTTCTTGAAATGCAAACAAGTTATGTCTATTAGCTTG---- 3363 || | ||| || | || |||||||| ||| || |||| | ||| | ||| Sbjct 2867 ATTCTACG---GTTGGCAGCATCTTGAAAAGCA---AAATTAT-TTGATTTGTTTGCAGT 2815 Query 3364 ACCTAACTGACCATAAGATAGTAATAATCCAAAGATCATATCAAAAAAGAAATTTTTACC 3423 || | || ||| | || ||||| || | |||||||||||||||||||||| Sbjct 2814 GCCCAGTTGCCCAAGATTTAAACATAATGTTAATAATGTATCAAAAAAGAAATTTTTACC 2755 Query 3424 AGCACTTGGAGGAGA 3438 ||| ||| |||| Sbjct 2754 GGCAGATGGCCGAGA 2740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18781137405905