Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_004284.1
Length=5908
Score E
Sequences producing significant alignments: (Bits) Value
seq11045 125 3e-25
>seq11045
Length=5519
Score = 125 bits (138), Expect = 3e-25
Identities = 295/435 (68%), Gaps = 28/435 (6%)
Strand=Plus/Minus
Query 3018 ATTAAAATGTAATATTATATTTACTCAATAAAA---GGAAAAATGTCATTGGATGTGGTT 3074
||||||| | || |||||||| ||||||| | ||||||| || ||||| |||||
Sbjct 3160 ATTAAAACTTTATTTTATATTTT---AATAAAATTTGAAAAAATGACAATGGATATGGTT 3104
Query 3075 TCAATTCATAATCCTTTAAGAATGGCGCAGCATTCCACTTGTATTGAATAATTCTATCAC 3134
| |||| |||||| || | || || |||| ||||| || || || ||||||||||
Sbjct 3103 TTAATTTATAATCTTTCAGAAAAGGTGCAGTTTTCCATTTATACTGCTTAATTCTATCTT 3044
Query 3135 TAAAAGCAGTTTCATACATAAAAGGTACAGTATTATTAGTAAGTATTATAACTGGAGTGC 3194
|||||||| || ||||||| ||| |||||||||||||||||||| || || |
Sbjct 3043 TAAAAGCATCATCGCTCATAAAATTTACGTGATTATTAGTAAGTATTATAATAGGTGTTC 2984
Query 3195 GTTTTACATGTGCATCCATACGA-TTTTTAACTCTAACAGTATAAGGATCTCCTC---CA 3250
|||||||| | || || | | | ||||||||||| | | ||||||| ||
Sbjct 2983 TCTTTACATGAGTAT-CACCCAACATCTTAACTCTAAC---CTTGGTGTCTCCTCCTTCA 2928
Query 3251 AACATCATTTTAATTGTATCAGTTAAAGAACTCTCATAGTTAGGTTCATTCCAT--AATA 3308
|||| |||| | ||| || | ||||| || || ||||||||| ||||
Sbjct 2927 AACAAAGTTTTCAAATAATCTGTCATGCTTGATTCATAATTCGGCTCATTCCATAGAATA 2868
Query 3309 ATAC-ACGTTTATTAGGTGCTTCTTGAAATGCAAACAAGTTATGTCTATTAGCTTG---- 3363
|| | ||| || | || |||||||| ||| || |||| | ||| | |||
Sbjct 2867 ATTCTACG---GTTGGCAGCATCTTGAAAAGCA---AAATTAT-TTGATTTGTTTGCAGT 2815
Query 3364 ACCTAACTGACCATAAGATAGTAATAATCCAAAGATCATATCAAAAAAGAAATTTTTACC 3423
|| | || ||| | || ||||| || | ||||||||||||||||||||||
Sbjct 2814 GCCCAGTTGCCCAAGATTTAAACATAATGTTAATAATGTATCAAAAAAGAAATTTTTACC 2755
Query 3424 AGCACTTGGAGGAGA 3438
||| ||| ||||
Sbjct 2754 GGCAGATGGCCGAGA 2740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 18781137405905
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |