Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_004286.1 Length=6039 Score E Sequences producing significant alignments: (Bits) Value seq11045 152 2e-33 >seq11045 Length=5519 Score = 152 bits (168), Expect = 2e-33 Identities = 293/422 (69%), Gaps = 24/422 (6%) Strand=Plus/Plus Query 2588 TGCTGGTAAAAATTTCTTTTTTGATATGATTTTTGGATTATTATTATCTTATGGACAACT 2647 ||| |||||||||||||||||||||| | || ||||| ||| | ||| ||||| Sbjct 2751 TGCCGGTAAAAATTTCTTTTTTGATACATTATTAACATTATGTTTAAATCTTGGGCAACT 2810 Query 2648 TGGA----CAAGCTAATAGACATAACTTATTTGCTTTTCAAGAAGCTCCGAATAAACGTG 2703 || ||| | ||| | |||| || |||||||||||| ||| | || | Sbjct 2811 GGGCACTGCAAACAAATCAA-ATAATTT---TGCTTTTCAAGATGCTGCCAACCGTAGAA 2866 Query 2704 TACTTCTATGGAATGAACCAAACTATGAAAGTTCTTTAACTGATACAATTAAAATGATGT 2763 | ||||||||||||| || || |||||| | || ||| | |||| ||| Sbjct 2867 TTATTCTATGGAATGAGCCGAATTATGAATCAAGCATGACAGATTATTTGAAAACTTTGT 2926 Query 2764 TTG---GAGGAGACCCATATACTGTTAGAGTTAAGAA-TCGTATGGATGCACATGTAAAA 2819 ||| |||||||| | | ||||||||||||| | | || || | |||||||| Sbjct 2927 TTGAAGGAGGAGACACCAAG---GTTAGAGTTAAGATGTTGGGTG-ATACTCATGTAAAG 2982 Query 2820 CGCACTCCAGTTATTATACTTACTAATAA-CACTGTACCTTTTATGTATGAAACAGCTTT 2878 | || || |||| |||||||||||||| ||| ||| ||||||| || ||||| Sbjct 2983 AGAACACCTATTATAATACTTACTAATAATCAC-GTAAATTTTATGAGCGATGATGCTTT 3041 Query 2879 TGCTGATAGAATTATTCAATATAAATGGAATGCTGCGCCATTCCTAAAGGAATACGAATT 2938 | |||||||||| || ||||||||||| |||| || || || || || || |||| Sbjct 3042 TAAAGATAGAATTAAGCAGTATAAATGGAAAACTGCACCTTTTCTGAAAGATTATAAATT 3101 Query 2939 GAAACCACATCCAATGACATTTTTTC---TTTTATTGAGTAAATATAATATTACATTTTA 2995 |||||| ||||| || ||||||||| ||||||| |||||||| || | ||||| Sbjct 3102 AAAACCATATCCATTGTCATTTTTTCAAATTTTATT---AAAATATAAAATAAAGTTTTA 3158 Query 2996 AT 2997 || Sbjct 3159 AT 3160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19196497588068