Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_005041.2 Length=5335 Score E Sequences producing significant alignments: (Bits) Value seq17592 80.6 9e-12 >seq17592 Length=2661 Score = 80.6 bits (88), Expect = 9e-12 Identities = 274/416 (66%), Gaps = 12/416 (3%) Strand=Plus/Minus Query 2065 ACACTTTGGAATGTAATATTCCAAAACGTAATTGCTTTGTAGTT-TGTAGTCCACCTAGT 2123 ||| ||| ||| | || ||||||||| | || | || | | ||| | |||||| ||| | Sbjct 1832 ACATTTTAGAACGCAAAATTCCAAAA-GCAAATACTATTTTGTTGTTTAGTCCTCCTTCT 1774 Query 2124 GCTGGGAAAAACTTTTTCTTTGATGGTGTTAAGGATTATTATTTGAATTCAGGACAGATG 2183 ||||||||| |||||| | || | | | | | ||| ||||||| ||||| || Sbjct 1773 AGTGGGAAAAATTTTTTCATGGACGTTTTCATTAACTATCTTTTGAATAGGGGACA-ATT 1715 Query 2184 AACAATC-CTAATAAATATAATCAATTTGCATATCAGGATTGCCATAA-TAGAAGGATTA 2241 | || |||| ||| ||| | ||||||| ||| ||| || |||| |||| | | | Sbjct 1714 AGGAAGAGCTAACAAAACTAACAATTTTGCATTTCAAGAT-GCAATAAATAGACGAGTAA 1656 Query 2242 TTATATGGAATGAACCTAATTATGAACCAAGGGAAATGGAGAACTTAAAAATGCTGTTTG 2301 || ||||| |||| || | || |||| | | | | || | || |||||||| || Sbjct 1655 TTTTATGGGATGAGCCAAGTTTTGAATTAGGTGCTTTAGAACAATTGAAAATGCTTACTG 1596 Query 2302 CTGGTGATAATTTGTCTGCCAATGTAAAATGTAAGCCTCAGGCAAATGTAAAACGAACAC 2361 ||||| | || || || |||||||| || || ||| | |||| | ||| | Sbjct 1595 GTGGTGGTGATATGAATGTTAATGTAAAGTGCAAAGAACAGCAACATGTTTACAAAACCC 1536 Query 2362 CTGTTATTGTGTTGACCAATTCACTGCCAA---ATTTTTGTCAACAAACAGCATTTAATG 2418 |||| || | || ||||| || | |||| | || || | | |||| |||| | Sbjct 1535 CTGTCATAATTTTAACCAA--CAATTCCAATGAAATTATGACTTTAC-CAGCTTTTAGAG 1479 Query 2419 ATCGTGTAATAACGTATCATTGGACTCAGGCTACATTTTTGAAGGACTACAATAAA 2474 | ||||| | | | | |||| | ||| ||||||||||| | ||| ||||| Sbjct 1478 ACCGTGTTAAACAATTTGTGTGGAAAGAAGCTCCATTTTTGAAGCAGTACGATAAA 1423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16948753320500