Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_005341.1
Length=6034
Score E
Sequences producing significant alignments: (Bits) Value
seq11045 149 2e-32
>seq11045
Length=5519
Score = 149 bits (164), Expect = 2e-32
Identities = 298/427 (70%), Gaps = 36/427 (8%)
Strand=Plus/Plus
Query 2587 GCTGGTAAAAATTTTTTCTTTGATATGATTTTTGGC-TTACTATTATCTTATGGACAACT 2645
|| ||||||||||| || ||||||| ||| || | ||| ||| | ||| |||||
Sbjct 2752 GCCGGTAAAAATTTCTTTTTTGATAC-ATTATTAACATTATGTTTAAATCTTGGGCAACT 2810
Query 2646 TGGT----CAAGCTAATAGACATAACTTGTTTGCTTTTCAAGAAGCTCCTAATAAACGT- 2700
|| ||| | ||| | |||| || |||||||||||| ||| | || |||
Sbjct 2811 GGGCACTGCAAACAAATCAA-ATAATTT---TGCTTTTCAAGATGCTGCCAAC---CGTA 2863
Query 2701 GTATTATT--ATGGAATGAACCTAATTATGAGAGTTCAC---TAACTGATACAATTAAAA 2755
| |||||| ||||||||| || |||||||| ||| | || ||| | ||||
Sbjct 2864 GAATTATTCTATGGAATGAGCCGAATTATGAA---TCAAGCATGACAGATTATTTGAAAA 2920
Query 2756 TGATGTTTG---GAGGAGACCCATATACTGTTAGAGTTAAGAA-TCGTATGGATGCACAT 2811
|||||| |||||||| | | ||||||||||||| | | || || | |||
Sbjct 2921 CTTTGTTTGAAGGAGGAGACACCAAG---GTTAGAGTTAAGATGTTGGGTG-ATACTCAT 2976
Query 2812 GTAAAACGCACTCCAGTTATTATACTAACTAATAATACAGTACCTTTTATGTATGAAACT 2871
||||| | || || |||| ||||| ||||||||| ||| ||||||| || |
Sbjct 2977 GTAAAGAGAACACCTATTATAATACTTACTAATAATCACGTAAATTTTATGAGCGATGAT 3036
Query 2872 GCTTTTGCTGATAGAATTATTCAGTATAAATGGAATGCTGCGCCATTCCTAAAGGATTAT 2931
|||||| |||||||||| |||||||||||||| |||| || || || || ||||||
Sbjct 3037 GCTTTTAAAGATAGAATTAAGCAGTATAAATGGAAAACTGCACCTTTTCTGAAAGATTAT 3096
Query 2932 GAATTGAAACCACATCCAATGACATTTTTCC---TTTTATTGAGTAAATATAATATTACA 2988
|||| |||||| ||||| || ||||||| | ||||||| |||||||| || |
Sbjct 3097 AAATTAAAACCATATCCATTGTCATTTTTTCAAATTTTATT---AAAATATAAAATAAAG 3153
Query 2989 TTTTAAT 2995
|||||||
Sbjct 3154 TTTTAAT 3160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19180508501288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |