Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_012685.1 Length=5759 Score E Sequences producing significant alignments: (Bits) Value seq11045 183 1e-42 >seq11045 Length=5519 Score = 183 bits (202), Expect = 1e-42 Identities = 507/762 (67%), Gaps = 39/762 (5%) Strand=Plus/Plus Query 3419 AACTACTTGATTAACACAAGTTTTTCCATCCATCTGTTGTATATGTTTGGCTAAGCATAC 3478 |||||||||||||||| |||||||||||||| |||| || | || ||||| || Sbjct 3794 AACTACTTGATTAACAACTGTTTTTCCATCCATTTGTTTAATTTTTTCAGCTAAACAAGG 3853 Query 3479 CCAACCTCCCCAGGAATTAGTTGTA-GCACCGTCTGTGTCAGTTGCCGCTTCAT-CACTA 3536 |||||| || |||| | | ||| || || || || | | ||| | || Sbjct 3854 CCAACCACCA----AATTGTCTAAAAGCAGCGGTAGTAGCATTTCCAG-TTCTTGCAGAT 3908 Query 3537 AGTGCGTGATAATTATATATATTACACTGCCTACCAACATGATGTTTTGGAATATATGAA 3596 |||| ||||||||||| | || || || || ||||||||||||||| || | Sbjct 3909 TGTGCCCAATAATTATATAAAAAGGCATGTCTTCCTACTTGATGTTTTGGAATA-AT-AT 3966 Query 3597 GCAAAACTAGGATGATTATTATTCGTTCCG---TAAAAATCTGCTACCATTCCTCTATAT 3653 |||| | | | | || || | || ||| |||||| ||||||||| |||| Sbjct 3967 TTAAAAATGCGTTCGT-ATCGTTGTTACCAGAATAATAATCTGTTACCATTCCAGGATAT 4025 Query 3654 TTTCCTGGAATTGGTTTATA-TCTCGGCTTTGCAATTTTACTAGGAATCATAGGTTTACC 3712 | || | || || ||| ||| || |||||||| | |||| | |||||||| Sbjct 4026 GTACCAGA---TGCTTGATAGTCT-GGTTTTGCAATAGCAGTAGGTACCATAGGTTGTGT 4081 Query 3713 AGCAGTAAATTCAGTAAAGGAAACATTAGATCCATACCCTGTCTTATTCAAAGCTGTAGC 3772 ||| |||| | ||||| |||||||||||||| | ||||| |||| || | ||| Sbjct 4082 TGCATCAAATGCTGTAAATGAAACATTAGATCCCCAGCCTGTTCTATTTAATCCATGAGC 4141 Query 3773 AACAGCTATATCATTAATCTGATTAAGAGTAGCTAGCGATGTAGCAGATGATGC---TGT 3829 ||||| |||||||| |||||||| | ||| |||| || || | |||||| ||| Sbjct 4142 CACAGCAATATCATTTATCTGATTTAAAGTTGCTA---ATCCAGTACTTGATGCATTTGT 4198 Query 3830 TTCGAATTGAATAGTTGACCCTCTATAAATAACCTGAATAGATACATCCTTTACTCTTGA 3889 ||| ||||||||||| || |||||||| ||||| | || ||||| | | | | Sbjct 4199 TTCAAATTGAATAGTAGAGCCTCTATATATAACTTCAACGTCAACATCTGTAATTTTACT 4258 Query 3890 TCCAATTGGCATCAGATTAAACTCGGACGGAGTTAAATAAAAACATGGTAAATGCCATGG 3949 |||| |||| |||| || ||| || || || ||||| |||| ||| | ||| ||||| Sbjct 4259 TCCATTTGGAATCAAATCAAATTCTGATTGATTTAAAAAAAATGCTGGAATATGGCATGG 4318 Query 3950 AACTTCTGCCAGAT----AAGTTGTCAACCAT---CTTGA-----ATTACTATTGGAATC 3997 ||||||||| | || || | ||| ||| ||||| || | |||| || Sbjct 4319 AACTTCTGCTAAATACGAAACTAACCAAACATTTCCTTGAGCTATATCATTATT---ATT 4375 Query 3998 TGATGTTATTATTTTTGGAGCAAATCCGAAAGTCATAAATTTATGAACTTTACGATATGT 4057 | || | | |||||| ||||| || |||||||| || || ||||| |||||| Sbjct 4376 TCCTGCACAAAATGCTGGAGCTAATCCAAATGTCATAAACTTGTGTACTTTTGTATATGT 4435 Query 4058 ACTAATTTTAGAACCAAAAAGTGAAATTGGACGTTCAATATGATATTCTGCTAATCCATC 4117 | | |||| ||||| | ||| || || |||||||| || | | |||||| Sbjct 4436 AGAAGTTTTCTTTCCAAATATTGATATAGGCTTTTCAATATAATGAACCATCATTCCATC 4495 Query 4118 TGAAGACGCTCCTCCCGAAGCTTGTTCCTTGCCCGTACCAGT 4159 || || || || |||||| || || || ||||| || Sbjct 4496 ACTCGAAGCACCACCACTAGCTTGCTCGTTTCCAGTACCCGT 4537 Score = 147 bits (162), Expect = 8e-32 Identities = 542/826 (66%), Gaps = 51/826 (6%) Strand=Plus/Plus Query 2352 GGCAAAAATTTTTTCTTTGA--CATGATTATGGCAATTTGTTTAAACTATGGACAATTAG 2409 || |||||||| || ||||| ||| |||| || | |||||||| ||| ||| | | Sbjct 2755 GGTAAAAATTTCTTTTTTGATACATTATTAA--CATTATGTTTAAATCTTGGGCAACTGG 2812 Query 2410 GACAAGCAAACAGACATAATTTGTTTGCATTTCAAGAAGCTCCCAATAAAAGA-TTATTA 2468 | ||||||| | ||| ||||| |||||||| ||| |||| ||| ||||| Sbjct 2813 GCACTGCAAACAAATCAAATAATTTTGCTTTTCAAGATGCTGCCAACCGTAGAATTATT- 2871 Query 2469 CTTTGGAATGAACCAAACTATGAA---AGCGCAATGACAGATACAATAAAAATGATGATG 2525 || |||||||| || || |||||| ||| ||||||||| | |||| || | Sbjct 2872 CTATGGAATGAGCCGAATTATGAATCAAGC---ATGACAGATTATTTGAAAACTTTGTTT 2928 Query 2526 GGCGGAG-ATCCATATACTGTAAGAGTAAA-ATATCAAGGAGATACACATGTAACCAGAA 2583 | |||| | || | || ||||| || || | || ||||| ||||||| |||| Sbjct 2929 GAAGGAGGAGACACCAAG-GTTAGAGTTAAGATGTTG-GGTGATACTCATGTAAAGAGAA 2986 Query 2584 CTCCCGTCTTAATACTTACCAATAATTATGTTTCATTTCTTCAAGAATCTGCGTTTAAAG 2643 | || | |||||||||| |||||| | || ||| | || ||| ||||||| Sbjct 2987 CACCTATTATAATACTTACTAATAATCACGTAAATTTTATGAGCGATGATGCTTTTAAAG 3046 Query 2644 ATAGAATTAAAGTGTATAAATGGAGAGAAGCACCATTTCTTAAAGATGTTCATGTAAAAC 2703 |||||||||| ||||||||||| | ||||| ||||| |||||| | | |||||| Sbjct 3047 ATAGAATTAAGCAGTATAAATGGAAAACTGCACCTTTTCTGAAAGATTATAAATTAAAAC 3106 Query 2704 CTTATCCTATGGCTTTCTTTGATATACTAAATAAATACAACATTCAATTTTAAATCGTTT 2763 | ||||| || | || ||| | || || ||||| || | | || ||| |||| | | Sbjct 3107 CATATCCATTGTCATTTTTTCAAATTTTATTAAAATATAA-AATAAAGTTTTAATCTTAT 3165 Query 2764 ---------ATTATGTTGCTCGTGGTAAAATATCACCTGAAAATGTCTTATACAATCCTG 2814 |||||||| || || | | ||| | || || ||||| | Sbjct 3166 AAAATATAAATTATGTTTCTAATGATGGGGT---TCCT---ATTG---GGTATAATCCAG 3216 Query 2815 CGTATGGGGCATGGTCGTTCTCGGGATCAATATAATTTTGA-GGA--ATTTCATTACTTG 2871 | | | ||| ||| || ||||| | |||| || ||| |||| | ||| Sbjct 3217 CAAAAGTAGCACCGTCATTTCTTGGATCTA-CTAATGCAGATGGACGATTTGCCAAGTTG 3275 Query 2872 G-TAGTGAAATAACAACTTCTCCTGGAGGAACATTGGGTACATTAGCATAAGGAAATTCT 2930 | || | || |||||||||| | || ||||| | || ||||| | || | | Sbjct 3276 GTTATTTGCAT---AACTTCTCCTTGTGGTACATTTGCTAATGTAGCAAACGGCCAAGCA 3332 Query 2931 GTTGGAGTATGTTCAACGACATTCATTGTAGCAATTACTTCCCAATAAGCTCTTGTGTCT 2990 ||||| || ||| | || |||||||||||| ||||||||||| |||||||| || Sbjct 3333 GTTGGTTGATATTCTTCAACGGTCATTGTAGCAACAACTTCCCAATATGCTCTTGTATCA 3392 Query 2991 GTCCAATTATCAAATACTCCTT---CTTCTAAGATCAATGCTCCACTAGACAAAGCTGGT 3047 |||||||||| ||| ||| | |||| || || | | || || || Sbjct 3393 GTCCAATTATTAAACTGAGCTTGAGATGCTAA---TAAAGCAGTGGTGGTTAATGCAGGA 3449 Query 3048 ACTGGTTGTACACCAATATGCATAGATGGCATAATATGAGGATCTTGTGCTCCCCAAAAT 3107 || || |||||||| ||||| | |||||| |||||| || | |||||||||| Sbjct 3450 ACAGGCTGTACACCGATATGTAAAGATGGTTGGATATGACCTTCCATGGTTCCCCAAAAT 3509 Query 3108 CCACTGCGTGCAAT-TTGAGACTTTTCAATAGGAGTATATATGTCA 3152 ||||| | | || |||||| |||||||| ||||| || || ||| Sbjct 3510 CCACT-CTTCATATATTGAGATTTTTCAATTGGAGTGTAAATATCA 3554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18304653586140