Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_019492.1
Length=5990
Score E
Sequences producing significant alignments: (Bits) Value
seq11045 134 5e-28
>seq11045
Length=5519
Score = 134 bits (148), Expect = 5e-28
Identities = 296/433 (68%), Gaps = 28/433 (6%)
Strand=Plus/Plus
Query 2573 TCTCCTCCAAGTGCTGGTAAAAATTTCTTTTTTGATATGATTTTTGGATTGTTATTATCT 2632
|||| ||| ||| |||||||||||||||||||||| | || ||| | ||| |
Sbjct 2740 TCTCGGCCATCTGCCGGTAAAAATTTCTTTTTTGATACATTATTAACATTATGTTTAAAT 2799
Query 2633 TATGGACAGTTAGGT----CAAGCTAATAGACATAACTTGTTTGCTTTTCAAGAAGCACC 2688
||| || | || ||| | ||| | |||| || |||||||||||| | |
Sbjct 2800 CTTGGGCAACTGGGCACTGCAAACAAATCAA-ATAATTT---TGCTTTTCAAGATG---C 2852
Query 2689 TAATAAACGT-GTGTTAT--TGTGGAATGAACCTAATTATGAAAGTTCGTTAACAGACAC 2745
| || ||| | |||| | |||||||| || ||||||||| | |||||
Sbjct 2853 TGCCAACCGTAGAATTATTCTATGGAATGAGCCGAATTATGAATCAAGCATGACAGATTA 2912
Query 2746 AATTAAAATGATGTTT---GGAGGAGACCCTTACACTGTTAGAGTTAAGA-ATCGTATGG 2801
| |||| ||||| ||||||||| | || ||||||||||||| | | | |
Sbjct 2913 TTTGAAAACTTTGTTTGAAGGAGGAGACAC---CAAGGTTAGAGTTAAGATGTTGGGT-G 2968
Query 2802 ATGCACATGTAAAACGCACTCCAGTTATTATACTAACTAACAATACTGTACCTTTTATGT 2861
|| | |||||||| | || || |||| ||||| ||||| ||| ||| |||||||
Sbjct 2969 ATACTCATGTAAAGAGAACACCTATTATAATACTTACTAATAATCACGTAAATTTTATGA 3028
Query 2862 ATGAAACTGCTTTTAGTGATAGAATTATTCAATATAAATGGGATGCTGCGCCATTCCTGA 2921
|| |||||||| |||||||||| || ||||||||| | |||| || || ||||
Sbjct 3029 GCGATGATGCTTTTAAAGATAGAATTAAGCAGTATAAATGGAAAACTGCACCTTTTCTGA 3088
Query 2922 AGGATTATGAATTGAAACCACATCCAATGACATTTTTCC---TTTTATTGAGTAAATACA 2978
| |||||| |||| |||||| ||||| || ||||||| | ||||||| ||||| |
Sbjct 3089 AAGATTATAAATTAAAACCATATCCATTGTCATTTTTTCAAATTTTATT---AAAATATA 3145
Query 2979 ATATATCATTTTA 2991
| ||| |||||
Sbjct 3146 AAATAAAGTTTTA 3158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19043363400675
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |