Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_020206.1 Length=1719 Score E Sequences producing significant alignments: (Bits) Value seq6962 100 3e-18 seq19885 87.8 2e-14 >seq6962 Length=3750 Score = 100 bits (110), Expect = 3e-18 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1003 TTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCCATTTTAT 1062 ||| | | ||||| |||| |||||| |||| ||||| || |||| ||| || |||| || Sbjct 3218 TTTCATTTGTACTCTGTACGGGTATTGGTCACATATCTTAAGTAATTCATCTTATTTAAT 3159 Query 1063 CCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCCCACCATTC 1122 |||||| |||||||||||||| | |||| | | |||| |||| || ||||||| Sbjct 3158 CCATCCATAGAAGTCGTCTATAACGACGCACTTCTCTTGGCGGTAGTTGTGTCACCATTG 3099 Query 1123 TCCGCGTGGTTTGTAGTATA 1142 |||||| |||||| |||| Sbjct 3098 TCCGCGGTTTTTGTAATATA 3079 >seq19885 Length=16406 Score = 87.8 bits (96), Expect = 2e-14 Identities = 98/129 (76%), Gaps = 8/129 (6%) Strand=Plus/Minus Query 1018 GTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCCATTTTATCCATCCGTAGAAGTC 1077 ||| || ||| ||||||| ||||| || ||||| |||||||| ||||| ||||||||||| Sbjct 5551 GTAGGGATATTGGTCGCAAATTTTAAGGAGTTCATCCCATTTGATCCAACCGTAGAAGTC 5492 Query 1078 GTCTATTA----TGACGTTGTCTTGTTGGTGGTATCCGTCCCACCATTCTCCGCGTGGTT 1133 ||||| | ||| ||| ||||| ||| || ||||||||| ||| || || Sbjct 5491 ATCTATGACCACTGAAGTT-TCTTGCCGGTAGTT---GTCCCACCACATTCCTCGGTTTT 5436 Query 1134 TGTAGTATA 1142 ||||||||| Sbjct 5435 TGTAGTATA 5427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5390065660440