Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_021568.1 Length=1832 Score E Sequences producing significant alignments: (Bits) Value seq25738 82.4 9e-13 seq19885 78.8 1e-11 >seq25738 Length=80363 Score = 82.4 bits (90), Expect = 9e-13 Identities = 105/143 (73%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 721 TACTACAA--ACCAAGAGGAGAATGGTGGGATGGATACTGTGGACAACCTAATGTGGTCA 778 |||||||| ||| | ||| ||||||||||| |||| | | || | || || | Sbjct 9786 TACTACAAGAACC--GTGGACAATGGTGGGATAAATACCGCCAAGAAACATCCGTTGTAA 9729 Query 779 TCGACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGACCGATACC 838 | || || ||||||||||||||||||| || ||| || | ||||| || |||| ||||| Sbjct 9728 TTGATGATTTTTATGGATGGATTAAATGGGATGAAATTTTAAAAATCTGTGACCAATACC 9669 Query 839 CCTACCGCGTCCCAGTCAAAGGA 861 | || ||||| | | ||||||| Sbjct 9668 CATATCGCGTACAATGCAAAGGA 9646 >seq19885 Length=16406 Score = 78.8 bits (86), Expect = 1e-11 Identities = 94/128 (73%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 721 TACTACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGACAACCTAATGTGGTCATC 780 ||||||||| ||||| |||||||| ||| | | || || |||||||| Sbjct 5429 TACTACAAAAACCGAGGAATGTGGTGGGACAACTACCGGCAAGAAACTTCAGTGGTCATA 5488 Query 781 GACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGACCGATACCCC 840 || ||||| || || ||||| |||| || ||||| || ||||||||||||| ||| ||| Sbjct 5489 GATGACTTCTACGGTTGGATCAAATGGGATGAACTCCTTAAAATTTGCGACCAATATCCC 5548 Query 841 TACCGCGT 848 ||||| || Sbjct 5549 TACCGTGT 5556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5751535939152