Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_023869.1 Length=1896 Score E Sequences producing significant alignments: (Bits) Value seq6962 86.0 7e-14 seq19885 82.4 9e-13 seq11581 78.8 1e-11 >seq6962 Length=3750 Score = 86.0 bits (94), Expect = 7e-14 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1036 TTTGATCGGTACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGAT 1095 ||| || ||||| |||| |||||| |||||| || || |||| || || ||||| || Sbjct 3218 TTTCATTTGTACTCTGTACGGGTATTGGTCACATATCTTAAGTAATTCATCTTATTTAAT 3159 Query 1096 CCATCCGTAGAAGTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCACCATTC 1155 |||||| |||||||||||||||| || | | | |||| |||| || ||||||| Sbjct 3158 CCATCCATAGAAGTCGTCTATAACGACGCACTTCTCTTGGCGGTAGTTGTGTCACCATTG 3099 Query 1156 TCCTCTTGGTTTGTAGTATA 1175 ||| | |||||| |||| Sbjct 3098 TCCGCGGTTTTTGTAATATA 3079 >seq19885 Length=16406 Score = 82.4 bits (90), Expect = 9e-13 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 1051 GTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCGTAGAAGTC 1110 |||||| ||| ||| |||||||| || || || || |||||||||| ||||||||||| Sbjct 5551 GTAGGGATATTGGTCGCAAATTTTAAGGAGTTCATCCCATTTGATCCAACCGTAGAAGTC 5492 Query 1111 GTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCACCATTCTCCTCTTGGTTTGTA 1170 ||||| | || |||| ||| |||| ||||||||| ||||| |||||| Sbjct 5491 ATCTATGACCACTGAAGTTTCTTGCCGGTAGTTGTCCCACCACATTCCTCGGTTTTTGTA 5432 Query 1171 GTATA 1175 ||||| Sbjct 5431 GTATA 5427 >seq11581 Length=78704 Score = 78.8 bits (86), Expect = 1e-11 Identities = 116/164 (71%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 1015 TGTAAATTCTTGAAAGCCTCCTTTGATCGGTACTTTGTAGGGGTATCTGTCACAAATTTT 1074 || |||||||| ||||| |||||| | || ||||| ||||| | || || ||| | Sbjct 40493 TGAAAATTCTTCAAAGCTTCCTTTTGTTTCGACCTTGTATGGGTAACGATCGCAGATTCT 40552 Query 1075 GAGTAGGTCGTCGTATTTGATCCATCCGTAGAAGTCGTCTAT----AATTACACTTGTTT 1130 ||| || || || |||||| ||| |||||||||||||| || |||| || || Sbjct 40553 GAGCAGCTCATCCCATTTGAACCAGCCGTAGAAGTCGTCGATCCACCATTATTGTTTCTT 40612 Query 1131 GTTGGTGGTATCCGTCCCACCATTCTCCTCTTGGTTTGTAGTAT 1174 ||| | ||| ||| |||||||| ||| |||||||||| Sbjct 40613 CTTGTTTGTAGCCGCGCCACCATTGGTTTCTGTTTTTGTAGTAT 40656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5956262468688