Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_023874.1 Length=1790 Score E Sequences producing significant alignments: (Bits) Value seq6962 80.6 3e-12 seq19885 78.8 1e-11 >seq6962 Length=3750 Score = 80.6 bits (88), Expect = 3e-12 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 716 GGCACGGTCTATTATAAACCCAGAGGAGAATGGTGGGACGGCTACATGCAGCAAACGTCT 775 |||| || ||||| ||| | | ||| ||||||| || |||| || | | || Sbjct 3072 GGCAGTGTATATTACAAAAACCGCGGACAATGGTGACACAACTACCGCCAAGAGAAGTGC 3131 Query 776 GTTATTATAGATGACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAATATGTGAC 835 || ||||||| ||||||||||| ||||| ||||| |||||| | || || ||||||||| Sbjct 3132 GTCGTTATAGACGACTTCTATGGATGGATTAAATAAGATGAATTACTTAAGATATGTGAC 3191 Query 836 AGATACCCACACAAGGTTCCAATAAAA 862 |||||| ||| || | ||| ||| Sbjct 3192 CAATACCCGTACAGAGTACAAATGAAA 3218 >seq19885 Length=16406 Score = 78.8 bits (86), Expect = 1e-11 Identities = 103/143 (72%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 722 GTCTATTATAAACCCAGAGGAGAATGGTGGGACGGCTACATGCAGCAAACGTCTGTTATT 781 || || || ||| | ||||| ||||||||| |||| ||| |||| || || | Sbjct 5426 GTATACTACAAAAACCGAGGAATGTGGTGGGACAACTACCGGCAAGAAACTTCAGTGGTC 5485 Query 782 ATAGATGACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAATATGTGACAGATAC 841 |||||||||||||| || ||||| |||| |||||||| || ||||| || ||| ||| Sbjct 5486 ATAGATGACTTCTACGGTTGGATCAAATGGGATGAACTCCTTAAAATTTGCGACCAATAT 5545 Query 842 CCACACAAGGTTCCAATAAAAGG 864 || || |||| || ||||| Sbjct 5546 CCCTACCGTGTTCAAAGTAAAGG 5568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5617184154144