Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_023886.1 Length=1741 Score E Sequences producing significant alignments: (Bits) Value seq11581 96.9 4e-17 seq6962 89.7 6e-15 seq25738 78.8 1e-11 >seq11581 Length=78704 Score = 96.9 bits (106), Expect = 4e-17 Identities = 101/131 (77%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 795 ATCGACGACTTCTATGGATGGATAAAATACGACGAACTTCTTAAAATATGTGACCGATAT 854 |||||||||||||| || ||| | |||| || || || || | ||| || || || || Sbjct 40594 ATCGACGACTTCTACGGCTGGTTCAAATGGGATGAGCTGCTCAGAATCTGCGATCGTTAC 40535 Query 855 CCATACAAGGTTCAAATAAAAGGAGGCTTTGAAGAATT--CACCAGTAAATATATTTTTA 912 ||||||||||| ||| ||||||| ||||||||||||| || || ||| || ||| Sbjct 40534 CCATACAAGGTCGAAACAAAAGGAAGCTTTGAAGAATTTTCATCA--AAAACGATCATTA 40477 Query 913 TTACCAGCAAT 923 ||||||||||| Sbjct 40476 TTACCAGCAAT 40466 >seq6962 Length=3750 Score = 89.7 bits (98), Expect = 6e-15 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 787 GCGTCATCATCGACGACTTCTATGGATGGATAAAATACGACGAACTTCTTAAAATATGTG 846 ||||| | || |||||||||||||||||||| ||||| || ||| | ||||| ||||||| Sbjct 3130 GCGTCGTTATAGACGACTTCTATGGATGGATTAAATAAGATGAATTACTTAAGATATGTG 3189 Query 847 ACCGATATCCATACAAGGTTCAAATAAAA 875 ||| ||| || |||| || ||||| ||| Sbjct 3190 ACCAATACCCGTACAGAGTACAAATGAAA 3218 >seq25738 Length=80363 Score = 78.8 bits (86), Expect = 1e-11 Identities = 121/173 (70%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 750 CGTGGTCTATGGTGGGATGGTTATCAACAGCAGACTAGCGTCATCATCGACGACTTCTAT 809 ||||| | |||||||||| || | || | || ||| | || || || || ||| Sbjct 9774 CGTGGACAATGGTGGGATAAATACCGCCAAGAAACATCCGTTGTAATTGATGATTTTTAT 9715 Query 810 GGATGGATAAAATACGACGAACTTCTTAAAATATGTGACCGATATCCATACAAGGTTCAA 869 |||||||| |||| || ||| || | ||||| ||||||| ||| ||||| || ||| Sbjct 9714 GGATGGATTAAATGGGATGAAATTTTAAAAATCTGTGACCAATACCCATATCGCGTACAA 9655 Query 870 ATAAAAGGAGGCTTTGAAGAATTCACCAGTAAATATATTTTTATTACCAGCAA 922 |||||| | || |||||| ||||||||||||||| || ||||| Sbjct 9654 TGCAAAGGATCCAGTGCAGAATTTTGTTCTAAATATATTTTTATAACTAGCAA 9602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5460440404968