Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_031755.1 Length=2229 Score E Sequences producing significant alignments: (Bits) Value seq14537 237 2e-59 seq11581 221 2e-54 seq19885 102 1e-18 seq25738 78.8 1e-11 >seq14537 Length=14353 Score = 237 bits (262), Expect = 2e-59 Identities = 416/604 (69%), Gaps = 20/604 (3%) Strand=Plus/Minus Query 226 TCTCACATCGAACAAGCCAAGGGCACCGAACGTGCAAATTACAGGTATTGTACAAAATCT 285 |||||||| || | ||| | || |||||| | |||| | |||||||| ||| ||| Sbjct 2383 TCTCACATTGAGCCAGCAAGAGGTACCGAAATTCAAAATAAGAGGTATTGCACAG--TCT 2326 Query 286 AATTCATTTGAAGAATATGGCCAACAAAAAAGCCAGGGACAACGTTCTGATCTTGAACAT 345 | |||||||||||| | || | |||||| ||||| || ||| || ||| | Sbjct 2325 GGATTATTTGAAGAATA-GAAAAATTTAGAAGCCAAGGACACCGAAGTGACCTGGAAAAA 2267 Query 346 GCCATCCACGAGCTGCTACATGAACGACAACCTCTACAACAAGTGGCTGAAAATAATCCA 405 || ||||| || || |||||| |||| | |||| | |||||| || |||| | Sbjct 2266 GCAATCCATGAACTTTCACATGACCGACTCCTAATACATGATGTGGCTAAACTTAATTCG 2207 Query 406 AGTGTTTTCGTACGTAACTTCCGAGGACTTCATGAACTTCGAAATCTTCTCATTCCCGTT 465 || |||| || ||| ||||| ||||| ||||| | ||| ||| | ||| |||||||| Sbjct 2206 AGCGTTTATGTTCGTTACTTCAGAGGAATTCATACAATTCTAAACGTCCTCGTTCCCGTT 2147 Query 466 AAACCTCGTGATTTTCGATCAGACGTTTACATCTTCATCGGCCCAACTAGAACTGGTAAA 525 ||||||| ||||||||| | || || || || || || ||| | ||||| | | Sbjct 2146 GCTCCTCGTGCATTTCGATCAAATGTCTATGTCATCTGGGGACCGACTCGCACTGGAACA 2087 Query 526 TCCCAAGCTGCCAAATCTCTTGCTGGAGAATCAACCACATACTACAAAAATAGAAGTAAC 585 || ||||||| || ||||||||||||| | | || |||||| |||| | ||| | Sbjct 2086 TCAAAAGCTGCAAAGACTCTTGCTGGAGATACGGCAACGTACTACGAAAACCGCAGTCAA 2027 Query 586 TGGTGGCACGGA----------TACCGACAAGAATCAACAGTCATCATCGACGACTTCTA 635 |||||||| || ||| |||| | ||| ||||||||||| || || || Sbjct 2026 TGGTGGCATAGACAAAAGGTGGTACAAACAAAAGGAAACGGTCATCATCGATGATTTTTA 1967 Query 636 TGGATGGATTAAATGGGATGAACTCCTCAAAATCTGCGATCGTTACCCCTACAAGGTGGA 695 ||||||| |||||||||| ||| | ||||| |||| || | |||||||| || Sbjct 1966 TGGATGGCTTAAATGGGACGAATTACTCAAGATCT------GTCATCCCTACAATGTTAC 1913 Query 696 AACCAAAGGAGGATATGAAGAATTTACGAGCCAAACTATTATCATTACAAG-CAATACGC 754 ||| ||| | | |||| ||||||||| |||| || ||||| || || || | | Sbjct 1912 AACGAAAAAATGTTATGGAGAATTTACCTCTAAAACGATCATCATCACCAGTAAACAGTC 1853 Query 755 CCCCGGAAACGTGGTATAAGTTTGAGGGATTTGATCCCAAACCACTCCTCAGCGACCGAA 814 ||| || |||||| ||||| || | ||| ||||| ||||| || |||| ||| Sbjct 1852 ACCCATCAATGTGGTACAAGTTCGATGAATTCGATCCATCTCCACTGCTGTCCGACAGAA 1793 Query 815 TCAA 818 |||| Sbjct 1792 TCAA 1789 >seq11581 Length=78704 Score = 221 bits (244), Expect = 2e-54 Identities = 405/592 (68%), Gaps = 26/592 (4%) Strand=Plus/Minus Query 232 ATCGAACAAGCCAAGGGCACCGAACGTGCAAATTACAGGTATTGTACAAAATCTAATTCA 291 ||||||| ||| ||||||||| | |||| | |||||||| |||| ||| | Sbjct 40968 ATCGAACCAGCTCGAGGCACCGAAATTCAAAATAAGAGGTATTGCTCAAAGTCTGGCATA 40909 Query 292 TTTGAAGAATATGGCCAACAAAAAAGCCAGGGACAACGTTCTGATCTTG-AACATGCCAT 350 |||||||| | ||| | | |||||| ||||| | | | |||| || | || || Sbjct 40908 TTTGAAGAGTTTGGATCCCTTAGAAGCCAAGGACACCAAAC--AACTTGGAAAAAGCAAT 40851 Query 351 CCACGAGCTGCTACATGAACGACAACCTCTACAACAAGTGGCTGAAAATAATCCAAGTGT 410 | ||||||| || ||||||||| |||| || |||||||| | ||||||||| || Sbjct 40850 CAACGAGCTTCTTAATGAACGACGACCTTTATGTGAAGTGGCTAAGCTTAATCCAAGCGT 40791 Query 411 TTTCGTACGTAACTTCCGAGGACTTCATGAACTTCGAAATCTTCTCATTCCCGTTAAACC 470 || | ||||| ||||| | | |||||| || ||||||| | Sbjct 40790 TTACAG-----------GAGGAGTTCATACATTATGAAATCCCGTC---CCCGTTACTTC 40745 Query 471 TCGTGATTTTCGATCAGACGTTTACATCTTCATCGGCCCAACTAGAACTGGTAAATCCCA 530 |||| |||||||| | | ||| || | | || ||| |||| |||| | Sbjct 40744 TCGTTCATTTCGATCCAATGCTTATATGGAGACTG-----ACAAGAGCTGGAAAATATAA 40690 Query 531 AGCTGCCAAATCTCTTGCTGGAGAATCAACCACATACTACAAAAATAGAAGTAACTGGTG 590 ||| | | || || || || || |||||||||||||| |||| | ||||| Sbjct 40689 GGCTTCTCACACTACCGCAGGCAGTTCTACAACATACTACAAAAACAGAAACCAATGGTG 40630 Query 591 GCACGGATACCGACAAGAATCAACAGTCATC----ATCGACGACTTCTATGGATGGATTA 646 || ||| ||| ||||||| |||| | || |||||||||||||| || ||| | | Sbjct 40629 GCGCGGCTACAAACAAGAAGAAACAATAATGGTGGATCGACGACTTCTACGGCTGGTTCA 40570 Query 647 AATGGGATGAACTCCTCAAAATCTGCGATCGTTACCCCTACAAGGTGGAAACCAAAGGAG 706 |||||||||| || |||| |||||||||||||||||| |||||||| ||||| |||||| Sbjct 40569 AATGGGATGAGCTGCTCAGAATCTGCGATCGTTACCCATACAAGGTCGAAACAAAAGGAA 40510 Query 707 GATATGAAGAATTTACGAGCCAAACTATTATCATTACAAGCAATACGCCCCCGGAAACGT 766 | | |||||||||| | |||| || || ||||| ||||||| | ||| | | Sbjct 40509 GCTTTGAAGAATTTTCATCAAAAACGATCATTATTACCAGCAATAACCACCCCTCATGCT 40450 Query 767 GGTATAAGTTTGAGGGATTTGATCCCAAACCACTCCTCAGCGACCGAATCAA 818 ||||||| || ||||| ||||| |||| || |||||| || ||||||| Sbjct 40449 GGTATAAATTCGAGGGTTTTGACCCCACCCCCCTCCTCTCAGAATGAATCAA 40398 >seq19885 Length=16406 Score = 102 bits (112), Expect = 1e-18 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 564 ATACTACAAAAATAGAAGTAACTGGTGGCACGGATACCGACAAGAATCAACAGTCATCAT 623 |||||||||||| || | | |||||| || ||||| |||||| | |||| |||| Sbjct 5428 ATACTACAAAAACCGAGGAATGTGGTGGGACAACTACCGGCAAGAAACTTCAGTGGTCAT 5487 Query 624 CGACGACTTCTATGGATGGATTAAATGGGATGAACTCCTCAAAATCTGCGATCGTTACCC 683 || |||||||| || ||||| ||||||||||||||||| ||||| ||||| | || || Sbjct 5488 AGATGACTTCTACGGTTGGATCAAATGGGATGAACTCCTTAAAATTTGCGACCAATATCC 5547 Query 684 CTAC 687 |||| Sbjct 5548 CTAC 5551 >seq25738 Length=80363 Score = 78.8 bits (86), Expect = 1e-11 Identities = 91/123 (74%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 564 ATACTACAAAAATAGAAGTAACTGGTGGCACGGATACCGACAAGAATCAACAGTCATCAT 623 ||||||||| || | | | |||||| | |||||| |||||| || | || | || Sbjct 9787 ATACTACAAGAACCGTGGACAATGGTGGGATAAATACCGCCAAGAAACATCCGTTGTAAT 9728 Query 624 CGACGACTTCTATGGATGGATTAAATGGGATGAACTCCTCAAAATCTGCGATCGTTACCC 683 || || || |||||||||||||||||||||||| | | |||||||| || | ||||| Sbjct 9727 TGATGATTTTTATGGATGGATTAAATGGGATGAAATTTTAAAAATCTGTGACCAATACCC 9668 Query 684 CTA 686 || Sbjct 9667 ATA 9665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7021480192680