Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_014928.1
Length=1751
Score E
Sequences producing significant alignments: (Bits) Value
seq20204 87.8 2e-14
seq5653 86.0 7e-14
>seq20204
Length=425557
Score = 87.8 bits (96), Expect = 2e-14
Identities = 110/150 (73%), Gaps = 7/150 (5%)
Strand=Plus/Minus
Query 562 ATATACTACAAACCCCGAGGATTATGGTGGGATGGCTATGAACAACAGCGCAGCGTTATA 621
||||| || ||| | || || |||||||| || ||| ||| |||| | ||
Sbjct 510 ATATATTATAAAACACGTGGTAATTGGTGGGACGGATATT-----CAGAGCAG--TCATC 458
Query 622 ATAGACGACTTCTATGGATGGATAAAGTACGACGAAATGCTGAAAATAATGGACCGCTAC 681
|| ||||| |||||||||||||| || ||||||||| | || |||||| |||| | ||
Sbjct 457 ATCGACGATTTCTATGGATGGATTAAATACGACGAACTACTCAAAATATCGGACAGATAT 398
Query 682 CCATACAAGGTACAAATAAAAGGAGGATTT 711
|| ||| |||||| | ||||||||||||
Sbjct 397 CCTTACCAGGTACCGGTCAAAGGAGGATTT 368
>seq5653
Length=48260
Score = 86.0 bits (94), Expect = 7e-14
Identities = 111/151 (74%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 562 ATATACTACAAACCCCGAGGATTATGGTGGGATGGCTATGAACAACAGCGCAGC-GTTAT 620
||||||||||| | || || |||||||| || ||| | | || || ||| || ||
Sbjct 23919 ATATACTACAAGACACGTGGTAATTGGTGGGACGGATATTCAAACCATCG-AGCAGTCAT 23977
Query 621 AATAGACGACTTCTATGGATGGATAAAGTACGACGAAATGCTGAAAATAATGGACCGCTA 680
|| |||||||| ||||||||||| || || || ||| | || |||||| || || ||
Sbjct 23978 CATCGACGACTTTTATGGATGGATTAAATATGATGAATTACTCAAAATATCAGATCGATA 24037
Query 681 CCCATACAAGGTACAAATAAAAGGAGGATTT 711
||| ||| |||| | || |||||||| |||
Sbjct 24038 CCCTTACCAGGTTCCGATCAAAGGAGGTTTT 24068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5493206286656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |