Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_014928.1 Length=1751 Score E Sequences producing significant alignments: (Bits) Value seq20204 87.8 2e-14 seq5653 86.0 7e-14 >seq20204 Length=425557 Score = 87.8 bits (96), Expect = 2e-14 Identities = 110/150 (73%), Gaps = 7/150 (5%) Strand=Plus/Minus Query 562 ATATACTACAAACCCCGAGGATTATGGTGGGATGGCTATGAACAACAGCGCAGCGTTATA 621 ||||| || ||| | || || |||||||| || ||| ||| |||| | || Sbjct 510 ATATATTATAAAACACGTGGTAATTGGTGGGACGGATATT-----CAGAGCAG--TCATC 458 Query 622 ATAGACGACTTCTATGGATGGATAAAGTACGACGAAATGCTGAAAATAATGGACCGCTAC 681 || ||||| |||||||||||||| || ||||||||| | || |||||| |||| | || Sbjct 457 ATCGACGATTTCTATGGATGGATTAAATACGACGAACTACTCAAAATATCGGACAGATAT 398 Query 682 CCATACAAGGTACAAATAAAAGGAGGATTT 711 || ||| |||||| | |||||||||||| Sbjct 397 CCTTACCAGGTACCGGTCAAAGGAGGATTT 368 >seq5653 Length=48260 Score = 86.0 bits (94), Expect = 7e-14 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 562 ATATACTACAAACCCCGAGGATTATGGTGGGATGGCTATGAACAACAGCGCAGC-GTTAT 620 ||||||||||| | || || |||||||| || ||| | | || || ||| || || Sbjct 23919 ATATACTACAAGACACGTGGTAATTGGTGGGACGGATATTCAAACCATCG-AGCAGTCAT 23977 Query 621 AATAGACGACTTCTATGGATGGATAAAGTACGACGAAATGCTGAAAATAATGGACCGCTA 680 || |||||||| ||||||||||| || || || ||| | || |||||| || || || Sbjct 23978 CATCGACGACTTTTATGGATGGATTAAATATGATGAATTACTCAAAATATCAGATCGATA 24037 Query 681 CCCATACAAGGTACAAATAAAAGGAGGATTT 711 ||| ||| |||| | || |||||||| ||| Sbjct 24038 CCCTTACCAGGTTCCGATCAAAGGAGGTTTT 24068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5493206286656