Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_014929.1 Length=1703 Score E Sequences producing significant alignments: (Bits) Value seq20204 113 5e-22 seq5653 95.1 1e-16 seq3046 77.0 3e-11 >seq20204 Length=425557 Score = 113 bits (124), Expect = 5e-22 Identities = 117/151 (77%), Gaps = 7/151 (5%) Strand=Plus/Minus Query 562 ATATACTACAAACCACGTGGACTCTGGTGGGACGGTTATCATCAACAAGAAAATGTCATC 621 ||||| || ||| ||||||| ||||||||||| ||| ||| || | |||||| Sbjct 510 ATATATTATAAAACACGTGGTAATTGGTGGGACGGATAT--TCAG--AGCA---GTCATC 458 Query 622 ATAGACGATTTCTACGGATGGATAAAGTACGACGAACTCCTCAAAATAACTGACCGCTAC 681 || ||||||||||| |||||||| || ||||||||||| ||||||||| | ||| | || Sbjct 457 ATCGACGATTTCTATGGATGGATTAAATACGACGAACTACTCAAAATATCGGACAGATAT 398 Query 682 CCATATAAAGTACAAATCAAAGGAGGATTTG 712 || || | |||| ||||||||||||||| Sbjct 397 CCTTACCAGGTACCGGTCAAAGGAGGATTTG 367 >seq5653 Length=48260 Score = 95.1 bits (104), Expect = 1e-16 Identities = 114/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 562 ATATACTACAAACCACGTGGACTCTGGTGGGACGGTTATCATCAA--CAAGAAAATGTCA 619 ||||||||||| ||||||| ||||||||||| ||| |||| || | |||| Sbjct 23919 ATATACTACAAGACACGTGGTAATTGGTGGGACGGATAT--TCAAACCATCGAGCAGTCA 23976 Query 620 TCATAGACGATTTCTACGGATGGATAAAGTACGACGAACTCCTCAAAATAACTGACCGCT 679 |||| ||||| || || |||||||| || || || ||| | ||||||||| | || || | Sbjct 23977 TCATCGACGACTTTTATGGATGGATTAAATATGATGAATTACTCAAAATATCAGATCGAT 24036 Query 680 ACCCATATAAAGTACAAATCAAAGGAGGATTTG 712 |||| || | || | ||||||||||| |||| Sbjct 24037 ACCCTTACCAGGTTCCGATCAAAGGAGGTTTTG 24069 Score = 77.0 bits (84), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 8/156 (5%) Strand=Plus/Minus Query 562 ATATACTACAAACCACGTGGACTCTGGTGGGACGGTTATCATCAA--CAAGAAAATGTCA 619 ||||||||||| ||||||| ||||||||| | ||| |||| || | |||| Sbjct 24971 ATATACTACAAGACACGTGGTAATTGGTGGGACTGATAT--TCAAACCATCGAGCAGTCA 24914 Query 620 TCATAGACGATTTCTACGGATGGATAAAGTAC----GACGAACTCCTCAAAATAACTGAC 675 |||| ||||| || | |||||||| || || || ||| | ||||||||| | || Sbjct 24913 TCATCGACGACTTTAATGGATGGATTAAATAAATATGATGAATTACTCAAAATATCAGAT 24854 Query 676 CGCTACCCATATAAAGTACAAATCAAAGGAGGATTT 711 || ||||| || | || || ||||||||||| ||| Sbjct 24853 CGATACCCTTACCAGGTTCAGATCAAAGGAGGTTTT 24818 >seq3046 Length=880 Score = 77.0 bits (84), Expect = 3e-11 Identities = 103/142 (73%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 571 AAACCACGTGGACTCTGGTGGGACGGTTATCATCAACAAGAAAATGTCATCATAGACGAT 630 |||||| | ||| ||||||||||| || | | || || | | || || ||||| Sbjct 367 AAACCA-GAGGAGAATGGTGGGACGGATACTGTAATCATAAAGCTATTATTATTGACGAC 309 Query 631 TTCTACGGATGGATAAAGTACGACGAACTCCTCAAAATAACTGACCGCTACCCATATAAA 690 |||||||| ||| | || ||||| || || | |||||| |||| || ||||| || ||| Sbjct 308 TTCTACGGCTGGTTGAAATACGATGAGCTATTAAAAATAGCTGATCGTTACCCCTACAAA 249 Query 691 GTACAAATCAAAGGAGGATTTG 712 || | ||| |||||| | |||| Sbjct 248 GTCCCAATAAAAGGAAGCTTTG 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5339639657792