Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_014930.1 Length=1760 Score E Sequences producing significant alignments: (Bits) Value seq20204 100 3e-18 seq3046 95.1 1e-16 >seq20204 Length=425557 Score = 100 bits (110), Expect = 3e-18 Identities = 111/149 (74%), Gaps = 7/149 (5%) Strand=Plus/Minus Query 562 ATCTACTATAAACCACGAGGTCTGTGGGGGGACGGCTATACAAACCAGAAATGTGTTATT 621 || || |||||| |||| ||| ||| ||||||| ||| || | ||| | || Sbjct 510 ATATATTATAAAACACGTGGTAATTGGTGGGACGGATATTCAGAGCAG-------TCATC 458 Query 622 ATTGACGACTTCTACGGATGGATAAAATACGACGAACTACTGAAAATTTGCGACCGTTAT 681 || ||||| ||||| |||||||| ||||||||||||||||| ||||| | ||| | ||| Sbjct 457 ATCGACGATTTCTATGGATGGATTAAATACGACGAACTACTCAAAATATCGGACAGATAT 398 Query 682 CCTTACAAAGTACAAATAAAAGGGGGATT 710 |||||| | |||| | ||||| ||||| Sbjct 397 CCTTACCAGGTACCGGTCAAAGGAGGATT 369 >seq3046 Length=880 Score = 95.1 bits (104), Expect = 1e-16 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 571 AAACCACGAGGTCTGTGGGGGGACGGCTATACAAACCAGAAATGTGTTATTATTGACGAC 630 |||||| |||| ||| ||||||| || || || ||| | |||||||||||||| Sbjct 367 AAACCA-GAGGAGAATGGTGGGACGGATACTGTAATCATAAAGCTATTATTATTGACGAC 309 Query 631 TTCTACGGATGGATAAAATACGACGAACTACTGAAAATTTGCGACCGTTATCCTTACAAA 690 |||||||| ||| | |||||||| || ||| | ||||| || ||||| || |||||| Sbjct 308 TTCTACGGCTGGTTGAAATACGATGAGCTATTAAAAATAGCTGATCGTTACCCCTACAAA 249 Query 691 GTACAAATAAAAGG 704 || | ||||||||| Sbjct 248 GTCCCAATAAAAGG 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5522000029568