Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_020206.1 Length=1719 Score E Sequences producing significant alignments: (Bits) Value seq20204 100 3e-18 seq5653 98.7 1e-17 seq3046 91.5 2e-15 >seq20204 Length=425557 Score = 100 bits (110), Expect = 3e-18 Identities = 116/157 (74%), Gaps = 7/157 (4%) Strand=Plus/Plus Query 996 ATCCCCCTTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCC 1055 |||| ||||| || ||||| | ||| || |||| ||| ||||||| ||||||||||| Sbjct 370 ATCCTCCTTTGACCGGTACCTGGTAAGGATATCTGTCCGATATTTTGAGTAGTTCGTCGT 429 Query 1056 ATTTTATCCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCCC 1115 |||| |||||||| ||||| ||||| || ||||| || | |||||||||| Sbjct 430 ATTTAATCCATCCATAGAAATCGTCGATGATGAC-------TGCTCTGAATATCCGTCCC 482 Query 1116 ACCATTCTCCGCGTGGTTTGTAGTATATTCCTCCTTC 1152 |||| | || |||| ||| || |||||| | |||| Sbjct 483 ACCAATTACCACGTGTTTTATAATATATTTCATCTTC 519 >seq5653 Length=48260 Score = 98.7 bits (108), Expect = 1e-17 Identities = 119/159 (75%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 998 CCCCCTTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCCAT 1057 || ||||| | || || | ||| |||||||| || ||||||| |||| ||| || || Sbjct 24064 CCTCCTTTGATCGGAACCTGGTAAGGGTATCGATCTGATATTTTGAGTAATTCATCATAT 24005 Query 1058 TTTATCCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGG---TATCCGTCC 1114 || |||||||| || |||||||| || ||||| || || | |||| ||||||||| Sbjct 24004 TTAATCCATCCATAAAAGTCGTCGATGATGAC--TG-CTCGATGGTTTGAATATCCGTCC 23948 Query 1115 CACCATTCTCCGCGTGGTTTGTAGTATATTCCTCCTTCT 1153 ||||| | || |||| |||||||||||| | ||||| Sbjct 23947 CACCAATTACCACGTGTCTTGTAGTATATTTCATCTTCT 23909 >seq3046 Length=880 Score = 91.5 bits (100), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 7/137 (5%) Strand=Plus/Plus Query 1001 CCTTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCCATTTT 1060 ||||||| ||| |||||||| ||||| || || |||||||| ||| || || |||| Sbjct 235 CCTTTTATTGGGACTTTGTAGGGGTAACGATCAGCTATTTTTAATAGCTCATCGTATTTC 294 Query 1061 ATCCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGT---GGTATCCGTCCCAC 1117 | ||| |||||||||||||| || || | | ||| || | ||||||||||||| Sbjct 295 AACCAGCCGTAGAAGTCGTCAATAATAA---TAGCTTTATGATTACAGTATCCGTCCCAC 351 Query 1118 CATTCTCCGCGTGGTTT 1134 |||||||| | |||||| Sbjct 352 CATTCTCCTC-TGGTTT 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5390828534080