Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_021568.1 Length=1832 Score E Sequences producing significant alignments: (Bits) Value seq5653 104 3e-19 seq20204 100 3e-18 seq3046 77.0 4e-11 >seq5653 Length=48260 Score = 104 bits (114), Expect = 3e-19 Identities = 118/158 (75%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 709 GGAGAAGAT---ACCTACTACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGACAA 765 ||||||||| | |||||||| || | || | |||||||| ||||| | || Sbjct 23907 GGAGAAGATGAAATATACTACAAGACACGTGGTAATTGGTGGGACGGATATTCAAACCAT 23966 Query 766 CCTAATGTGGTCATCGACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATT 825 | || |||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct 23967 CGAGCAGTCATCATCGACGACTTTTATGGATGGATTAAATATGATGAATTACTCAAAATA 24026 Query 826 TGCGACCGATACCCCTACCGCGTCCCAGTCAAAGGAGG 863 | || |||||||| |||| || || |||||||||| Sbjct 24027 TCAGATCGATACCCTTACCAGGTTCCGATCAAAGGAGG 24064 Score = 80.6 bits (88), Expect = 3e-12 Identities = 73/92 (79%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 776 TCATCGACGACTTTTATGGATGGATTA----AATATGACGAACTTCTCAAAATTTGCGAC 831 |||||||||||||| |||||||||||| ||||||| ||| | |||||||| | || Sbjct 24913 TCATCGACGACTTTAATGGATGGATTAAATAAATATGATGAATTACTCAAAATATCAGAT 24854 Query 832 CGATACCCCTACCGCGTCCCAGTCAAAGGAGG 863 |||||||| |||| || | |||||||||| Sbjct 24853 CGATACCCTTACCAGGTTCAGATCAAAGGAGG 24822 >seq20204 Length=425557 Score = 100 bits (110), Expect = 3e-18 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 776 TCATCGACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGACCGAT 835 |||||||||| || ||||||||||||||||| |||||||| |||||||| | ||| ||| Sbjct 459 TCATCGACGATTTCTATGGATGGATTAAATACGACGAACTACTCAAAATATCGGACAGAT 400 Query 836 ACCCCTACCGCGTCCCAGTCAAAGGAGGAT 865 | || |||| || || ||||||||||||| Sbjct 399 ATCCTTACCAGGTACCGGTCAAAGGAGGAT 370 >seq3046 Length=880 Score = 77.0 bits (84), Expect = 4e-11 Identities = 110/154 (71%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 711 AGAAGATACCTACTACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGACAACCTAA 770 ||| || || | |||||| | ||||||||||||||||| ||||||||| | | ||| Sbjct 384 AGATGAAACTTTTTACAAAACCAGAGGAGAATGGTGGGACGGATACTGT---AATCATAA 328 Query 771 ---TGTGGTCATCGACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTG 827 | | | || |||||||| || || ||| | ||||| || || || | ||||| Sbjct 327 AGCTATTATTATTGACGACTTCTACGGCTGGTTGAAATACGATGAGCTATTAAAAATAGC 268 Query 828 CGACCGATACCCCTACCGCGTCCCAGTCAAAGGA 861 || || ||||||||| |||||| | |||||| Sbjct 267 TGATCGTTACCCCTACAAAGTCCCAATAAAAGGA 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5752349972864