Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_023421.1 Length=1378 Score E Sequences producing significant alignments: (Bits) Value seq20204 75.2 1e-10 >seq20204 Length=425557 Score = 75.2 bits (82), Expect = 1e-10 Identities = 161/237 (68%), Gaps = 9/237 (4%) Strand=Plus/Minus Query 625 TACTACAAACCACGCGGCGAATGGTGGGACGGATACACCGGACAAGAGGACGTGATCCTG 684 || || ||| |||| || | |||||||||||||| | |||| | || ||| | Sbjct 507 TATTATAAAACACGTGGTAATTGGTGGGACGGATATTC------AGAGCA-GTCATCATC 455 Query 685 GATGATTTCTACGGCTGGTTGAAGTTCGACGAACTTTTGAAAATATGTGACCGTTACCCG 744 || |||||||| || ||| | || | ||||||||| | ||||||| ||| | || || Sbjct 454 GACGATTTCTATGGATGGATTAAATACGACGAACTACTCAAAATATCGGACAGATATCCT 395 Query 745 TATCGTGTCCCTGTGAAGGGCTCATTTGTGCAGTTTACTGCTAAGAGGATTTACATTACT 804 || | || || || || || ||||| | |||| | || | |||| | |||||| Sbjct 394 TACCAGGTACCGGTCAAAGGAGGATTTGCCAATTTTATTTCTGATTGGATATTCATTACC 335 Query 805 TCTAATGTAGCTGCTTCAGAGTGGTATCATTTTCAGGGCTACGACCCT-ACTGCGTT 860 || ||| | || || ||||| |||||||| || ||| ||| | ||||| || Sbjct 334 TCAAATCAACACCCTAAGGATTGGTACCATTTTCAAGGATAC-ACCTTCACTGCTTT 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4299865608192