Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_023866.1
Length=1784
Score E
Sequences producing significant alignments: (Bits) Value
seq20204 100 3e-18
seq5653 96.9 4e-17
>seq20204
Length=425557
Score = 100 bits (110), Expect = 3e-18
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 1058 AACCCTCCTTTGACTTGTACCTTGTAGGGGTATCGGTCCATTATTTTCAGCATTTCGTCA 1117
|| ||||||||||| |||||| ||| || |||| |||| |||||| || | ||||||
Sbjct 369 AATCCTCCTTTGACCGGTACCTGGTAAGGATATCTGTCCGATATTTTGAGTAGTTCGTCG 428
Query 1118 TATTTTATCCATCCATAGAAGTCGTCTATGATGAC 1152
||||| |||||||||||||| ||||| ||||||||
Sbjct 429 TATTTAATCCATCCATAGAAATCGTCGATGATGAC 463
>seq5653
Length=48260
Score = 96.9 bits (106), Expect = 4e-17
Identities = 119/161 (74%), Gaps = 4/161 (2%)
Strand=Plus/Minus
Query 1058 AACCCTCCTTTGACTTGTACCTTGTAGGGGTATCGGTCCATTATTTTCAGCATTTCGTCA 1117
|| |||||||||| | |||| ||| |||||||| || |||||| || | ||| |||
Sbjct 24067 AAACCTCCTTTGATCGGAACCTGGTAAGGGTATCGATCTGATATTTTGAGTAATTCATCA 24008
Query 1118 TATTTTATCCATCCATAGAAGTCGTCTATGATGACGTTGTCCTGTTGATGG--TAGCCGT 1175
||||| ||||||||||| |||||||| |||||||| || | | | | | || ||||
Sbjct 24007 TATTTAATCCATCCATAAAAGTCGTCGATGATGAC--TGCTCGATGGTTTGAATATCCGT 23950
Query 1176 CCCACCAGAGCCCTCTAGGTTTGTAGTAAATTTCGCCTTCT 1216
||||||| || | | |||||||| ||||| |||||
Sbjct 23949 CCCACCAATTACCACGTGTCTTGTAGTATATTTCATCTTCT 23909
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5598783344000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |