Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_023866.1 Length=1784 Score E Sequences producing significant alignments: (Bits) Value seq20204 100 3e-18 seq5653 96.9 4e-17 >seq20204 Length=425557 Score = 100 bits (110), Expect = 3e-18 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1058 AACCCTCCTTTGACTTGTACCTTGTAGGGGTATCGGTCCATTATTTTCAGCATTTCGTCA 1117 || ||||||||||| |||||| ||| || |||| |||| |||||| || | |||||| Sbjct 369 AATCCTCCTTTGACCGGTACCTGGTAAGGATATCTGTCCGATATTTTGAGTAGTTCGTCG 428 Query 1118 TATTTTATCCATCCATAGAAGTCGTCTATGATGAC 1152 ||||| |||||||||||||| ||||| |||||||| Sbjct 429 TATTTAATCCATCCATAGAAATCGTCGATGATGAC 463 >seq5653 Length=48260 Score = 96.9 bits (106), Expect = 4e-17 Identities = 119/161 (74%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 1058 AACCCTCCTTTGACTTGTACCTTGTAGGGGTATCGGTCCATTATTTTCAGCATTTCGTCA 1117 || |||||||||| | |||| ||| |||||||| || |||||| || | ||| ||| Sbjct 24067 AAACCTCCTTTGATCGGAACCTGGTAAGGGTATCGATCTGATATTTTGAGTAATTCATCA 24008 Query 1118 TATTTTATCCATCCATAGAAGTCGTCTATGATGACGTTGTCCTGTTGATGG--TAGCCGT 1175 ||||| ||||||||||| |||||||| |||||||| || | | | | | || |||| Sbjct 24007 TATTTAATCCATCCATAAAAGTCGTCGATGATGAC--TGCTCGATGGTTTGAATATCCGT 23950 Query 1176 CCCACCAGAGCCCTCTAGGTTTGTAGTAAATTTCGCCTTCT 1216 ||||||| || | | |||||||| ||||| ||||| Sbjct 23949 CCCACCAATTACCACGTGTCTTGTAGTATATTTCATCTTCT 23909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5598783344000