Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_023867.1 Length=1740 Score E Sequences producing significant alignments: (Bits) Value seq5653 82.4 8e-13 seq20204 78.8 1e-11 >seq5653 Length=48260 Score = 82.4 bits (90), Expect = 8e-13 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 888 AATCCTCCTTTCACTTGAACTTGGTATGGGTAGCGGTCCATAATTTTGAGCATTTCGTCA 947 || |||||||| | |||| ||||| ||||| || || |||||||| | ||| ||| Sbjct 24067 AAACCTCCTTTGATCGGAACCTGGTAAGGGTATCGATCTGATATTTTGAGTAATTCATCA 24008 Query 948 TATTTTATCCATCCGTAGAAGTCATCGATTATTACGCATTTTTGTTGTTGGTATCCGTCC 1007 ||||| |||||||| || ||||| ||||| || || | || | | ||||||||| Sbjct 24007 TATTTAATCCATCCATAAAAGTCGTCGATGATGACTGCTCGATGGTTTGAATATCCGTCC 23948 Query 1008 CACCATAGTCCTCTGGGCTTGTAATATATT 1037 ||||| || | | |||||| |||||| Sbjct 23947 CACCAATTACCACGTGTCTTGTAGTATATT 23918 >seq20204 Length=425557 Score = 78.8 bits (86), Expect = 1e-11 Identities = 92/125 (74%), Gaps = 7/125 (6%) Strand=Plus/Plus Query 888 AATCCTCCTTTCACTTGAACTTGGTATGGGTAGCGGTCCATAATTTTGAGCATTTCGTCA 947 ||||||||||| || | || ||||| || || | |||| |||||||| | |||||| Sbjct 369 AATCCTCCTTTGACCGGTACCTGGTAAGGATATCTGTCCGATATTTTGAGTAGTTCGTCG 428 Query 948 TATTTTATCCATCCGTAGAAGTCATCGATTATTACGCATTTTTGTTGTTGGTATCCGTCC 1007 ||||| |||||||| ||||| || ||||| || || || | | ||||||||| Sbjct 429 TATTTAATCCATCCATAGAAATCGTCGATGATGAC-------TGCTCTGAATATCCGTCC 481 Query 1008 CACCA 1012 ||||| Sbjct 482 CACCA 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5458013934208