Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_023869.1 Length=1896 Score E Sequences producing significant alignments: (Bits) Value seq3046 120 4e-24 seq20204 105 8e-20 seq5653 104 3e-19 seq18992 89.7 6e-15 seq19503 86.0 7e-14 seq19619 78.8 1e-11 seq19940 77.0 4e-11 >seq3046 Length=880 Score = 120 bits (132), Expect = 4e-24 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1027 AAAGCCTCCTTTGATCGGTACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTC 1086 ||||| |||||| || || |||||||||||||| | ||| ||||| | ||| || || Sbjct 228 AAAGCTTCCTTTTATTGGGACTTTGTAGGGGTAACGATCAGCTATTTTTAATAGCTCATC 287 Query 1087 GTATTTGATCCATCCGTAGAAGTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTC 1146 |||||| | ||| |||||||||||||| ||||| | | | | || | ||||||||| Sbjct 288 GTATTTCAACCAGCCGTAGAAGTCGTCAATAATAATAGCTTTATGATTACAGTATCCGTC 347 Query 1147 CCACCATTCTCCTCTTGGTTTGTA 1170 ||||||||||||||| | |||||| Sbjct 348 CCACCATTCTCCTCTGGTTTTGTA 371 >seq20204 Length=425557 Score = 105 bits (116), Expect = 8e-20 Identities = 113/150 (75%), Gaps = 7/150 (5%) Strand=Plus/Plus Query 1027 AAAGCCTCCTTTGATCGGTACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTC 1086 ||| |||||||||| |||||| | ||| || |||||||| | ||||||||||| ||||| Sbjct 368 AAATCCTCCTTTGACCGGTACCTGGTAAGGATATCTGTCCGATATTTTGAGTAGTTCGTC 427 Query 1087 GTATTTGATCCATCCGTAGAAGTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTC 1146 |||||| |||||||| ||||| ||||| || || || || | |||||||| Sbjct 428 GTATTTAATCCATCCATAGAAATCGTCGATGATGAC-------TGCTCTGAATATCCGTC 480 Query 1147 CCACCATTCTCCTCTTGGTTTGTAGTATAT 1176 |||||| | || | || ||| || ||||| Sbjct 481 CCACCAATTACCACGTGTTTTATAATATAT 510 >seq5653 Length=48260 Score = 104 bits (114), Expect = 3e-19 Identities = 115/151 (76%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 1027 AAAGCCTCCTTTGATCGGTACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTC 1086 ||| |||||||||||||| || | ||| ||||||| || | |||||||||| || || Sbjct 24068 AAAACCTCCTTTGATCGGAACCTGGTAAGGGTATCGATCTGATATTTTGAGTAATTCATC 24009 Query 1087 GTATTTGATCCATCCGTAGAAGTCGTCTATAATTAC-ACTTGTTTGTTGGTGGTATCCGT 1145 ||||| |||||||| || |||||||| || || || || | | ||| | ||||||| Sbjct 24008 ATATTTAATCCATCCATAAAAGTCGTCGATGATGACTGCTCGATGGTTTG-AATATCCGT 23950 Query 1146 CCCACCATTCTCCTCTTGGTTTGTAGTATAT 1176 ||||||| | || | || ||||||||||| Sbjct 23949 CCCACCAATTACCACGTGTCTTGTAGTATAT 23919 Score = 78.8 bits (86), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 1027 AAAGCCTCCTTTGATCGGTACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTC 1086 ||| |||||||||||| | || | ||| ||||||| || | |||||||||| || || Sbjct 24818 AAAACCTCCTTTGATCTGAACCTGGTAAGGGTATCGATCTGATATTTTGAGTAATTCATC 24877 Query 1087 ----GTATTTGATCCATCCGTAGAAGTCGTCTATAATTAC-ACTTGTTTGTTGGTGGTAT 1141 ||||| |||||||| | |||||||| || || || || | | ||| | ||| Sbjct 24878 ATATTTATTTAATCCATCCATTAAAGTCGTCGATGATGACTGCTCGATGGTTTG-AATAT 24936 Query 1142 CCGTCCCACCATTCTCCTCTTGGTTTGTAGTATAT 1176 | ||||||||| | || | || ||||||||||| Sbjct 24937 CAGTCCCACCAATTACCACGTGTCTTGTAGTATAT 24971 >seq18992 Length=242700 Score = 89.7 bits (98), Expect = 6e-15 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1027 AAAGCCTCCTTTGATCGGTACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTC 1086 ||| | |||||| || || ||||| ||||||||||| || ||||| | || || || Sbjct 24729 AAAACTTCCTTTAATGGGGACTTTATAGGGGTATCTATCTGCTATTTTTAATAATTCATC 24788 Query 1087 GTATTTGATCCATCCGTAGAAGTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTC 1146 |||||||| ||| || || || || || || || || | | || | ||| ||||| Sbjct 24789 GTATTTGAGCCAACCATAAAAATCATCAATTATAACGGCTTTGTGGTTACAGTAACCGTC 24848 Query 1147 CCACCATTCTCCTCTTGGTTTGTA 1170 ||||||||||||||||| ||| || Sbjct 24849 CCACCATTCTCCTCTTGTTTTATA 24872 >seq19503 Length=119187 Score = 86.0 bits (94), Expect = 7e-14 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 1028 AAGCCTCCTTTGATCGGTACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCG 1087 |||| |||||||| || || || || || ||||| ||||| ||||| |||| || || Sbjct 25306 AAGCTCCCTTTGATAGGAACCTTATAAGGATATCTATCACATATTTTAAGTAATTCATCA 25365 Query 1088 TATTTGATCCATCCGTAGAAGTCGTCTATAATTACACTTGTTTGTTGGTGGTAT--CCGT 1145 ||||| | ||| || || || || |||||||| || | ||||| | | || || | Sbjct 25366 TATTTTAACCACCCATAAAAATCATCTATAATAAC--TGCTTTGTGGTTACAATAACCAT 25423 Query 1146 CCCACCATTCTCCTCTTGGTTTGTA 1170 |||||||||| |||| || |||||| Sbjct 25424 CCCACCATTCACCTCGTGTTTTGTA 25448 >seq19619 Length=26659 Score = 78.8 bits (86), Expect = 1e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1016 GTAAATTCTTGAAAGCCTCCTTTGATCGGTACTTTGTAGGGGTATCTGTCACAAATTTTG 1075 |||||||||| |||||||| || || ||||||||||| ||||| ||||||||||| Sbjct 23763 GTAAATTCTTCGAAGCCTCCCTTCGTCCCAACTTTGTAGGGATATCTATCACAAATTTTA 23704 Query 1076 AGTAGGTCGTCGTATTTGATCCATCCGTAGAAGTCGTCTATAATTACACTTGTTTGTTGG 1135 || || || || || | |||||| | ||||| || || || || || ||| || Sbjct 23703 AGCAGTTCATCCCATGGTAACCATCCATGAAAGTCATCCATGATAACTGTTTTTTCCCGG 23644 Query 1136 TGGTATCCGTCCCACCAT 1153 || || || ||||||| Sbjct 23643 TGATAGTTGTGCCACCAT 23626 >seq19940 Length=92698 Score = 77.0 bits (84), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 1034 CCTTTGATCGGTACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTG 1093 ||||| || ||||| ||||| |||||||| ||| ||| || | || |||||||| Sbjct 35855 CCTTTAATAGGTACCTTGTATGGGTATCTATCAGCGATTCCAAGCAATTCATCGTATTTA 35914 Query 1094 ATCCATCCGTAGAAGTCGTCTATAATTACA-CTTGTTTGTTGGTGGTATCCGTCCCACCA 1152 ||||| |||||||||||||| || || ||| | | | ||| | ||| ||| |||||| Sbjct 35915 ATCCAACCGTAGAAGTCGTCAATGATGACAGCCTTATAGTTCG-AGTAATCGTACCACCA 35973 Query 1153 TTCTCCTCT 1161 ||||| || Sbjct 35974 CTCTCCCCT 35982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5957105478016