Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_023874.1 Length=1790 Score E Sequences producing significant alignments: (Bits) Value seq3046 111 2e-21 seq19503 100 3e-18 seq18992 96.9 4e-17 seq19940 87.8 2e-14 seq20204 86.0 7e-14 seq19619 80.6 3e-12 >seq3046 Length=880 Score = 111 bits (122), Expect = 2e-21 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 727 TTATAAACCCAGAGGAGAATGGTGGGACGGCTACATGCAGCAAACGTCTGTTATTATAGA 786 ||| ||| |||||||||||||||||||||| ||| | || | || ||||||| || Sbjct 372 TTACAAAACCAGAGGAGAATGGTGGGACGGATACTGTAATCATAAAGCTATTATTATTGA 313 Query 787 TGACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAATATGTGACAGATACCCACA 846 |||||||| |||||| | ||||||||||| || | |||||| ||| | ||||| | Sbjct 312 CGACTTCTACGGCTGGTTGAAATACGATGAGCTATTAAAAATAGCTGATCGTTACCCCTA 253 Query 847 CAAGGTTCCAATAAAAGGA 865 ||| || |||||||||||| Sbjct 252 CAAAGTCCCAATAAAAGGA 234 >seq19503 Length=119187 Score = 100 bits (110), Expect = 3e-18 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 727 TTATAAACCCAGAGGAGAATGGTGGGACGGCTACATGCAGCAAACGTCTGTTATTATAGA 786 ||| ||| | |||| ||||||||||| || || | || | | ||||||||||| Sbjct 25449 TTACAAAACACGAGGTGAATGGTGGGATGGTTATTGTAACCACAAAGCAGTTATTATAGA 25390 Query 787 TGACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAATATGTGACAGATACCCACA 846 ||| || ||||| ||| ||||||| |||||| | || ||||||||||| ||||| || | Sbjct 25389 TGATTTTTATGGGTGGTTAAAATATGATGAATTACTTAAAATATGTGATAGATATCCTTA 25330 Query 847 CAAGGTTCCAATAAAAGG 864 |||||||| || ||||| Sbjct 25329 TAAGGTTCCTATCAAAGG 25312 >seq18992 Length=242700 Score = 96.9 bits (106), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 727 TTATAAACCCAGAGGAGAATGGTGGGACGGCTACATGCAGCAAACGTCTGTTATTATAGA 786 ||||||| | |||||||||||||||||||| ||| | || | | ||||| || || Sbjct 24873 TTATAAAACAAGAGGAGAATGGTGGGACGGTTACTGTAACCACAAAGCCGTTATAATTGA 24814 Query 787 TGACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAATATGTGACAGATACCCACA 846 ||| || ||||| ||| | |||||||||||| | | |||||| || |||||||| | Sbjct 24813 TGATTTTTATGGTTGGCTCAAATACGATGAATTATTAAAAATAGCAGATAGATACCCCTA 24754 Query 847 CAAGGTTCCAATAAAAGGAGGATTCGAAGAGTTTACAAGC-AAATATATTTTTATTACTT 905 || || || || |||||| | || | || ||| ||| ||| ||||| || |||| Sbjct 24753 TAAAGTCCCCATTAAAGGAAGTTTTG-CGAATTTTTTAGCTGAATGGATTTTCATAACTT 24695 Query 906 CAAAT 910 | ||| Sbjct 24694 CTAAT 24690 >seq19940 Length=92698 Score = 87.8 bits (96), Expect = 2e-14 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 729 ATAAACCCAGAGGAGAATGGTGGGACGGCTACATGCAGCAAACGTCTGTTATTATAGATG 788 ||||| || ||||| |||||| ||| ||| | | | | | |||| || || || | Sbjct 35990 ATAAAAGTAGGGGAGAGTGGTGGTACGATTACTCGAACTATAAGGCTGTCATCATTGACG 35931 Query 789 ACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAATATGTGACAGATACCCACACA 848 ||||||| || ||||| |||||||||||| |||| ||| ||| ||||||||| ||| Sbjct 35930 ACTTCTACGGTTGGATTAAATACGATGAATTGCTTGGAATCGCTGATAGATACCCATACA 35871 Query 849 AGGTTCCAATAAAAGG 864 |||| || || ||||| Sbjct 35870 AGGTACCTATTAAAGG 35855 >seq20204 Length=425557 Score = 86.0 bits (94), Expect = 7e-14 Identities = 106/146 (73%), Gaps = 7/146 (5%) Strand=Plus/Minus Query 725 TATTATAAACCCAGAGGAGAATGGTGGGACGGCTACATGCAGCAAACGTCTGTTATTATA 784 ||||||||| | | || | ||||||||||| || |||| || || || Sbjct 507 TATTATAAAACACGTGGTAATTGGTGGGACGGATATTCAGAGCA-------GTCATCATC 455 Query 785 GATGACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAATATGTGACAGATACCCA 844 || || |||||||| ||||| |||||||| ||||| || ||||||| |||||||| || Sbjct 454 GACGATTTCTATGGATGGATTAAATACGACGAACTACTCAAAATATCGGACAGATATCCT 395 Query 845 CACAAGGTTCCAATAAAAGGAGGATT 870 || |||| || | ||||||||||| Sbjct 394 TACCAGGTACCGGTCAAAGGAGGATT 369 >seq19619 Length=26659 Score = 80.6 bits (88), Expect = 3e-12 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 776 GTTATTATAGATGACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAATATGTGAC 835 ||||| || |||||||| |||| ||| || || ||||||||||| ||||| ||||| Sbjct 23657 GTTATCATGGATGACTTTCATGGATGGTTACCATGGGATGAACTGCTTAAAATTTGTGAT 23716 Query 836 AGATACCCACACAAGGTTCCAATAAAAGGAGGATTCGAAGAGTTTAC 882 ||||| || |||| ||| | || ||||| |||||||| ||||| Sbjct 23717 AGATATCCCTACAAAGTTGGGACGAAGGGAGGCTTCGAAGAATTTAC 23763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5617979172608