Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_023886.1 Length=1741 Score E Sequences producing significant alignments: (Bits) Value seq20204 125 8e-26 seq5653 105 7e-20 seq19503 93.3 5e-16 >seq20204 Length=425557 Score = 125 bits (138), Expect = 8e-26 Identities = 118/151 (78%), Gaps = 7/151 (5%) Strand=Plus/Minus Query 735 ATCTATTATAAACCGCGTGGTCTATGGTGGGATGGTTATCAACAGCAGACTAGCGTCATC 794 || ||||||||| | |||||| |||||||| || ||| | ||||| ||||| Sbjct 510 ATATATTATAAAACACGTGGTAATTGGTGGGACGGATATTCAGAGCAG-------TCATC 458 Query 795 ATCGACGACTTCTATGGATGGATAAAATACGACGAACTTCTTAAAATATGTGACCGATAT 854 |||||||| |||||||||||||| |||||||||||||| || ||||||| ||| ||||| Sbjct 457 ATCGACGATTTCTATGGATGGATTAAATACGACGAACTACTCAAAATATCGGACAGATAT 398 Query 855 CCATACAAGGTTCAAATAAAAGGAGGCTTTG 885 || ||| |||| | | |||||||| |||| Sbjct 397 CCTTACCAGGTACCGGTCAAAGGAGGATTTG 367 >seq5653 Length=48260 Score = 105 bits (116), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 750 CGTGGTCTATGGTGGGATGGTTATCAACAGCAGACTAGC-GTCATCATCGACGACTTCTA 808 |||||| |||||||| || ||| | | || | ||| ||||||||||||||||| || Sbjct 23934 CGTGGTAATTGGTGGGACGGATATTCAAACCAT-CGAGCAGTCATCATCGACGACTTTTA 23992 Query 809 TGGATGGATAAAATACGACGAACTTCTTAAAATATGTGACCGATATCCATACAAGGTTCA 868 ||||||||| ||||| || ||| | || ||||||| || ||||| || ||| |||||| Sbjct 23993 TGGATGGATTAAATATGATGAATTACTCAAAATATCAGATCGATACCCTTACCAGGTTCC 24052 Query 869 AATAAAAGGAGGCTTTG 885 || |||||||| |||| Sbjct 24053 GATCAAAGGAGGTTTTG 24069 Score = 87.8 bits (96), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 6/140 (4%) Strand=Plus/Minus Query 750 CGTGGTCTATGGTGGGATGGTTATCAACAGCAGACTAGC-GTCATCATCGACGACTTCTA 808 |||||| |||||||| | ||| | | || | ||| ||||||||||||||||| | Sbjct 24956 CGTGGTAATTGGTGGGACTGATATTCAAACCAT-CGAGCAGTCATCATCGACGACTTTAA 24898 Query 809 TGGATGGAT----AAAATACGACGAACTTCTTAAAATATGTGACCGATATCCATACAAGG 864 ||||||||| ||||| || ||| | || ||||||| || ||||| || ||| ||| Sbjct 24897 TGGATGGATTAAATAAATATGATGAATTACTCAAAATATCAGATCGATACCCTTACCAGG 24838 Query 865 TTCAAATAAAAGGAGGCTTT 884 |||| || |||||||| ||| Sbjct 24837 TTCAGATCAAAGGAGGTTTT 24818 >seq19503 Length=119187 Score = 93.3 bits (102), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 740 TTATAAACCGCGTGGTCTATGGTGGGATGGTTATCAACAGCAGACTAGC-GTCATCATCG 798 ||| ||| | || ||| |||||||||||||||| | || | ||| || || || | Sbjct 25449 TTACAAAACACGAGGTGAATGGTGGGATGGTTATTGTAACCACAA-AGCAGTTATTATAG 25391 Query 799 ACGACTTCTATGGATGGATAAAATACGACGAACTTCTTAAAATATGTGACCGATATCCAT 858 | || || ||||| ||| ||||||| || ||| | |||||||||||||| ||||||| | Sbjct 25390 ATGATTTTTATGGGTGGTTAAAATATGATGAATTACTTAAAATATGTGATAGATATCCTT 25331 Query 859 ACAAGGTTCAAATAAAAGGAGGCTT 883 | ||||||| || ||||| |||| Sbjct 25330 ATAAGGTTCCTATCAAAGGGAGCTT 25306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5461213238976