Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_023886.1
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
seq20204 125 8e-26
seq5653 105 7e-20
seq19503 93.3 5e-16
>seq20204
Length=425557
Score = 125 bits (138), Expect = 8e-26
Identities = 118/151 (78%), Gaps = 7/151 (5%)
Strand=Plus/Minus
Query 735 ATCTATTATAAACCGCGTGGTCTATGGTGGGATGGTTATCAACAGCAGACTAGCGTCATC 794
|| ||||||||| | |||||| |||||||| || ||| | ||||| |||||
Sbjct 510 ATATATTATAAAACACGTGGTAATTGGTGGGACGGATATTCAGAGCAG-------TCATC 458
Query 795 ATCGACGACTTCTATGGATGGATAAAATACGACGAACTTCTTAAAATATGTGACCGATAT 854
|||||||| |||||||||||||| |||||||||||||| || ||||||| ||| |||||
Sbjct 457 ATCGACGATTTCTATGGATGGATTAAATACGACGAACTACTCAAAATATCGGACAGATAT 398
Query 855 CCATACAAGGTTCAAATAAAAGGAGGCTTTG 885
|| ||| |||| | | |||||||| ||||
Sbjct 397 CCTTACCAGGTACCGGTCAAAGGAGGATTTG 367
>seq5653
Length=48260
Score = 105 bits (116), Expect = 7e-20
Identities = 107/137 (78%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 750 CGTGGTCTATGGTGGGATGGTTATCAACAGCAGACTAGC-GTCATCATCGACGACTTCTA 808
|||||| |||||||| || ||| | | || | ||| ||||||||||||||||| ||
Sbjct 23934 CGTGGTAATTGGTGGGACGGATATTCAAACCAT-CGAGCAGTCATCATCGACGACTTTTA 23992
Query 809 TGGATGGATAAAATACGACGAACTTCTTAAAATATGTGACCGATATCCATACAAGGTTCA 868
||||||||| ||||| || ||| | || ||||||| || ||||| || ||| ||||||
Sbjct 23993 TGGATGGATTAAATATGATGAATTACTCAAAATATCAGATCGATACCCTTACCAGGTTCC 24052
Query 869 AATAAAAGGAGGCTTTG 885
|| |||||||| ||||
Sbjct 24053 GATCAAAGGAGGTTTTG 24069
Score = 87.8 bits (96), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 6/140 (4%)
Strand=Plus/Minus
Query 750 CGTGGTCTATGGTGGGATGGTTATCAACAGCAGACTAGC-GTCATCATCGACGACTTCTA 808
|||||| |||||||| | ||| | | || | ||| ||||||||||||||||| |
Sbjct 24956 CGTGGTAATTGGTGGGACTGATATTCAAACCAT-CGAGCAGTCATCATCGACGACTTTAA 24898
Query 809 TGGATGGAT----AAAATACGACGAACTTCTTAAAATATGTGACCGATATCCATACAAGG 864
||||||||| ||||| || ||| | || ||||||| || ||||| || ||| |||
Sbjct 24897 TGGATGGATTAAATAAATATGATGAATTACTCAAAATATCAGATCGATACCCTTACCAGG 24838
Query 865 TTCAAATAAAAGGAGGCTTT 884
|||| || |||||||| |||
Sbjct 24837 TTCAGATCAAAGGAGGTTTT 24818
>seq19503
Length=119187
Score = 93.3 bits (102), Expect = 5e-16
Identities = 109/145 (75%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 740 TTATAAACCGCGTGGTCTATGGTGGGATGGTTATCAACAGCAGACTAGC-GTCATCATCG 798
||| ||| | || ||| |||||||||||||||| | || | ||| || || || |
Sbjct 25449 TTACAAAACACGAGGTGAATGGTGGGATGGTTATTGTAACCACAA-AGCAGTTATTATAG 25391
Query 799 ACGACTTCTATGGATGGATAAAATACGACGAACTTCTTAAAATATGTGACCGATATCCAT 858
| || || ||||| ||| ||||||| || ||| | |||||||||||||| ||||||| |
Sbjct 25390 ATGATTTTTATGGGTGGTTAAAATATGATGAATTACTTAAAATATGTGATAGATATCCTT 25331
Query 859 ACAAGGTTCAAATAAAAGGAGGCTT 883
| ||||||| || ||||| ||||
Sbjct 25330 ATAAGGTTCCTATCAAAGGGAGCTT 25306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5461213238976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |