Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_024700.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
seq3046 109 6e-21
seq20204 104 3e-19
seq18992 102 9e-19
seq18874 80.6 3e-12
seq5653 80.6 3e-12
seq20011 78.8 1e-11
>seq3046
Length=880
Score = 109 bits (120), Expect = 6e-21
Identities = 107/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 550 TACAAACCCAGAGGAGATTGGTGGGATGGATACGAACAACAACCAAATGTTATCATCGAC 609
|||||| |||||||||| |||||||| |||||| | || | | |||| || |||
Sbjct 371 TACAAAACCAGAGGAGAATGGTGGGACGGATACTGTAATCATAAAGCTATTATTATTGAC 312
Query 610 GATTTCTACGGATGGATCAAATACGACGAACTATTAAAAATAATGGATAGATACCCATAC 669
|| |||||||| ||| | |||||||| || |||||||||||| ||| | ||||| |||
Sbjct 311 GACTTCTACGGCTGGTTGAAATACGATGAGCTATTAAAAATAGCTGATCGTTACCCCTAC 252
Query 670 AGAGTACCAGTAAAAGGA 687
| ||| ||| ||||||||
Sbjct 251 AAAGTCCCAATAAAAGGA 234
>seq20204
Length=425557
Score = 104 bits (114), Expect = 3e-19
Identities = 112/149 (75%), Gaps = 7/149 (5%)
Strand=Plus/Minus
Query 543 AATTTACTACAAACCCAGAGGAGATTGGTGGGATGGATACGAACAACAACCAAATGTTAT 602
||| || || ||| | | || |||||||||| ||||| | | || || ||
Sbjct 511 AATATATTATAAAACACGTGGTAATTGGTGGGACGGATATTCAGAGCA-------GTCAT 459
Query 603 CATCGACGATTTCTACGGATGGATCAAATACGACGAACTATTAAAAATAATGGATAGATA 662
||||||||||||||| |||||||| ||||||||||||||| | |||||| ||| |||||
Sbjct 458 CATCGACGATTTCTATGGATGGATTAAATACGACGAACTACTCAAAATATCGGACAGATA 399
Query 663 CCCATACAGAGTACCAGTAAAAGGAGGAT 691
|| ||| ||||| || ||||||||||
Sbjct 398 TCCTTACCAGGTACCGGTCAAAGGAGGAT 370
>seq18992
Length=242700
Score = 102 bits (112), Expect = 9e-19
Identities = 137/187 (73%), Gaps = 8/187 (4%)
Strand=Plus/Minus
Query 550 TACAAACCCAGAGGAGATTGGTGGGATGGATACG--AACAACAACCAAATGTTATCATCG 607
|| ||| | |||||||| |||||||| || ||| ||| |||| | ||||| || |
Sbjct 24872 TATAAAACAAGAGGAGAATGGTGGGACGGTTACTGTAACCACAA--AGCCGTTATAATTG 24815
Query 608 ACGATTTCTACGGATGGATCAAATACGACGAACTATTAAAAATAATGGATAGATACCCAT 667
| ||||| || || ||| |||||||||| ||| ||||||||||| ||||||||||| |
Sbjct 24814 ATGATTTTTATGGTTGGCTCAAATACGATGAATTATTAAAAATAGCAGATAGATACCCCT 24755
Query 668 ACAGAGTACCAGTAAAAGGAGG--ATACCAAATTTTTAACTCAAAAAGAATTTGGATAAC 725
| | ||| || | |||||| | | | || |||||| || || | |||| |||||
Sbjct 24754 ATAAAGTCCCCATTAAAGGAAGTTTTGCGAATTTTTTAGCT--GAATGGATTTTCATAAC 24697
Query 726 ATCTAAT 732
||||||
Sbjct 24696 TTCTAAT 24690
>seq18874
Length=135210
Score = 80.6 bits (88), Expect = 3e-12
Identities = 71/89 (80%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 598 GTTATCATCGACGATTTCTACGGATGGATCAAATACGACGAACTATTAAAAATAATGGAT 657
|| || || || || |||||||||||||| |||||||| ||| ||||||||||| ||||
Sbjct 46549 GTGATTATGGATGACTTCTACGGATGGATTAAATACGATGAATTATTAAAAATAGCGGAT 46608
Query 658 AGATACCCATACAGAGTACCAGTAAAAGG 686
|| | ||| || | | ||||| | |||||
Sbjct 46609 AGGTGCCCTTATAAAATACCAATTAAAGG 46637
>seq5653
Length=48260
Score = 80.6 bits (88), Expect = 3e-12
Identities = 106/147 (72%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 543 AATTTACTACAAACCCAGAGGAGATTGGTGGGATGGATACGAACAACAACCAAATGTTAT 602
||| |||||||| | | || |||||||||| ||||| | | || | | || ||
Sbjct 23918 AATATACTACAAGACACGTGGTAATTGGTGGGACGGATATTCAAACCATCGAGCAGTCAT 23977
Query 603 CATCGACGATTTCTACGGATGGATCAAATACGACGAACTATTAAAAATAATGGATAGATA 662
||||||||| || || |||||||| ||||| || ||| || | |||||| ||| ||||
Sbjct 23978 CATCGACGACTTTTATGGATGGATTAAATATGATGAATTACTCAAAATATCAGATCGATA 24037
Query 663 CCCATACAGAGTACCAGTAAAAGGAGG 689
||| ||| || || | ||||||||
Sbjct 24038 CCCTTACCAGGTTCCGATCAAAGGAGG 24064
>seq20011
Length=79855
Score = 78.8 bits (86), Expect = 1e-11
Identities = 82/106 (77%), Gaps = 4/106 (4%)
Strand=Plus/Plus
Query 547 TACTACAAACCCAGAGGAGATTGGTGGGATGGATACGAACAACAACCAA--ATGTTATCA 604
||||||||| ||||||||||||||| || || ||||| || ||| ||| ||||
Sbjct 33625 TACTACAAAAATCGAGGAGATTGGTGGGTCGGCTATGAACATCA--CAAGTCTGTCATCA 33682
Query 605 TCGACGATTTCTACGGATGGATCAAATACGACGAACTATTAAAAAT 650
| ||| |||| || ||||| |||||||||||| ||||||||||
Sbjct 33683 TGGACCATTTTTATAAGTGGATTAAATACGACGAATTATTAAAAAT 33728
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5563590991552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |