Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_024700.1 Length=1773 Score E Sequences producing significant alignments: (Bits) Value seq3046 109 6e-21 seq20204 104 3e-19 seq18992 102 9e-19 seq18874 80.6 3e-12 seq5653 80.6 3e-12 seq20011 78.8 1e-11 >seq3046 Length=880 Score = 109 bits (120), Expect = 6e-21 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 550 TACAAACCCAGAGGAGATTGGTGGGATGGATACGAACAACAACCAAATGTTATCATCGAC 609 |||||| |||||||||| |||||||| |||||| | || | | |||| || ||| Sbjct 371 TACAAAACCAGAGGAGAATGGTGGGACGGATACTGTAATCATAAAGCTATTATTATTGAC 312 Query 610 GATTTCTACGGATGGATCAAATACGACGAACTATTAAAAATAATGGATAGATACCCATAC 669 || |||||||| ||| | |||||||| || |||||||||||| ||| | ||||| ||| Sbjct 311 GACTTCTACGGCTGGTTGAAATACGATGAGCTATTAAAAATAGCTGATCGTTACCCCTAC 252 Query 670 AGAGTACCAGTAAAAGGA 687 | ||| ||| |||||||| Sbjct 251 AAAGTCCCAATAAAAGGA 234 >seq20204 Length=425557 Score = 104 bits (114), Expect = 3e-19 Identities = 112/149 (75%), Gaps = 7/149 (5%) Strand=Plus/Minus Query 543 AATTTACTACAAACCCAGAGGAGATTGGTGGGATGGATACGAACAACAACCAAATGTTAT 602 ||| || || ||| | | || |||||||||| ||||| | | || || || Sbjct 511 AATATATTATAAAACACGTGGTAATTGGTGGGACGGATATTCAGAGCA-------GTCAT 459 Query 603 CATCGACGATTTCTACGGATGGATCAAATACGACGAACTATTAAAAATAATGGATAGATA 662 ||||||||||||||| |||||||| ||||||||||||||| | |||||| ||| ||||| Sbjct 458 CATCGACGATTTCTATGGATGGATTAAATACGACGAACTACTCAAAATATCGGACAGATA 399 Query 663 CCCATACAGAGTACCAGTAAAAGGAGGAT 691 || ||| ||||| || |||||||||| Sbjct 398 TCCTTACCAGGTACCGGTCAAAGGAGGAT 370 >seq18992 Length=242700 Score = 102 bits (112), Expect = 9e-19 Identities = 137/187 (73%), Gaps = 8/187 (4%) Strand=Plus/Minus Query 550 TACAAACCCAGAGGAGATTGGTGGGATGGATACG--AACAACAACCAAATGTTATCATCG 607 || ||| | |||||||| |||||||| || ||| ||| |||| | ||||| || | Sbjct 24872 TATAAAACAAGAGGAGAATGGTGGGACGGTTACTGTAACCACAA--AGCCGTTATAATTG 24815 Query 608 ACGATTTCTACGGATGGATCAAATACGACGAACTATTAAAAATAATGGATAGATACCCAT 667 | ||||| || || ||| |||||||||| ||| ||||||||||| ||||||||||| | Sbjct 24814 ATGATTTTTATGGTTGGCTCAAATACGATGAATTATTAAAAATAGCAGATAGATACCCCT 24755 Query 668 ACAGAGTACCAGTAAAAGGAGG--ATACCAAATTTTTAACTCAAAAAGAATTTGGATAAC 725 | | ||| || | |||||| | | | || |||||| || || | |||| ||||| Sbjct 24754 ATAAAGTCCCCATTAAAGGAAGTTTTGCGAATTTTTTAGCT--GAATGGATTTTCATAAC 24697 Query 726 ATCTAAT 732 |||||| Sbjct 24696 TTCTAAT 24690 >seq18874 Length=135210 Score = 80.6 bits (88), Expect = 3e-12 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 598 GTTATCATCGACGATTTCTACGGATGGATCAAATACGACGAACTATTAAAAATAATGGAT 657 || || || || || |||||||||||||| |||||||| ||| ||||||||||| |||| Sbjct 46549 GTGATTATGGATGACTTCTACGGATGGATTAAATACGATGAATTATTAAAAATAGCGGAT 46608 Query 658 AGATACCCATACAGAGTACCAGTAAAAGG 686 || | ||| || | | ||||| | ||||| Sbjct 46609 AGGTGCCCTTATAAAATACCAATTAAAGG 46637 >seq5653 Length=48260 Score = 80.6 bits (88), Expect = 3e-12 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 543 AATTTACTACAAACCCAGAGGAGATTGGTGGGATGGATACGAACAACAACCAAATGTTAT 602 ||| |||||||| | | || |||||||||| ||||| | | || | | || || Sbjct 23918 AATATACTACAAGACACGTGGTAATTGGTGGGACGGATATTCAAACCATCGAGCAGTCAT 23977 Query 603 CATCGACGATTTCTACGGATGGATCAAATACGACGAACTATTAAAAATAATGGATAGATA 662 ||||||||| || || |||||||| ||||| || ||| || | |||||| ||| |||| Sbjct 23978 CATCGACGACTTTTATGGATGGATTAAATATGATGAATTACTCAAAATATCAGATCGATA 24037 Query 663 CCCATACAGAGTACCAGTAAAAGGAGG 689 ||| ||| || || | |||||||| Sbjct 24038 CCCTTACCAGGTTCCGATCAAAGGAGG 24064 >seq20011 Length=79855 Score = 78.8 bits (86), Expect = 1e-11 Identities = 82/106 (77%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 547 TACTACAAACCCAGAGGAGATTGGTGGGATGGATACGAACAACAACCAA--ATGTTATCA 604 ||||||||| ||||||||||||||| || || ||||| || ||| ||| |||| Sbjct 33625 TACTACAAAAATCGAGGAGATTGGTGGGTCGGCTATGAACATCA--CAAGTCTGTCATCA 33682 Query 605 TCGACGATTTCTACGGATGGATCAAATACGACGAACTATTAAAAAT 650 | ||| |||| || ||||| |||||||||||| |||||||||| Sbjct 33683 TGGACCATTTTTATAAGTGGATTAAATACGACGAATTATTAAAAAT 33728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5563590991552