Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_025791.1 Length=1755 Score E Sequences producing significant alignments: (Bits) Value seq20204 100 3e-18 seq5653 96.9 4e-17 >seq20204 Length=425557 Score = 100 bits (110), Expect = 3e-18 Identities = 111/149 (74%), Gaps = 7/149 (5%) Strand=Plus/Plus Query 899 AATCCTCCTTTAATCTGTACCTTGTATGGGTAGCGGTCCATTATTTTCAGCATTTCGTCA 958 ||||||||||| | | |||||| ||| || || | |||| |||||| || | |||||| Sbjct 369 AATCCTCCTTTGACCGGTACCTGGTAAGGATATCTGTCCGATATTTTGAGTAGTTCGTCG 428 Query 959 TACTTTATCCAGCCGTAGAAGTCGTCGATGATTACGCAATCATGTTGTTGATATCCGTCC 1018 || || ||||| || ||||| ||||||||||| || || | | |||||||||| Sbjct 429 TATTTAATCCATCCATAGAAATCGTCGATGATGAC-------TGCTCTGAATATCCGTCC 481 Query 1019 CACCATAGTCCACGAGGTTTATAGTATAT 1047 ||||| ||||| | |||||| ||||| Sbjct 482 CACCAATTACCACGTGTTTTATAATATAT 510 >seq5653 Length=48260 Score = 96.9 bits (106), Expect = 4e-17 Identities = 114/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 899 AATCCTCCTTTAATCTGTACCTTGTATGGGTAGCGGTCCATTATTTTCAGCATTTCGTCA 958 || |||||||| ||| | |||| ||| ||||| || || |||||| || | ||| ||| Sbjct 24067 AAACCTCCTTTGATCGGAACCTGGTAAGGGTATCGATCTGATATTTTGAGTAATTCATCA 24008 Query 959 TACTTTATCCAGCCGTAGAAGTCGTCGATGATTAC-GCAATC-ATGTTGTTGATATCCGT 1016 || || ||||| || || |||||||||||||| || || || ||| | | |||||||| Sbjct 24007 TATTTAATCCATCCATAAAAGTCGTCGATGATGACTGC--TCGATGGTTTGAATATCCGT 23950 Query 1017 CCCACCATAGTCCACGAGGTTTATAGTATAT 1047 ||||||| ||||| | || |||||||| Sbjct 23949 CCCACCAATTACCACGTGTCTTGTAGTATAT 23919 Score = 80.6 bits (88), Expect = 3e-12 Identities = 113/155 (73%), Gaps = 8/155 (5%) Strand=Plus/Plus Query 899 AATCCTCCTTTAATCTGTACCTTGTATGGGTAGCGGTCCATTATTTTCAGCATTTCGTCA 958 || |||||||| ||||| |||| ||| ||||| || || |||||| || | ||| ||| Sbjct 24819 AAACCTCCTTTGATCTGAACCTGGTAAGGGTATCGATCTGATATTTTGAGTAATTCATCA 24878 Query 959 TACTTT----ATCCAGCCGTAGAAGTCGTCGATGATTAC-GCAATC-ATGTTGTTGATAT 1012 || || ||||| || | |||||||||||||| || || || ||| | | |||| Sbjct 24879 TATTTATTTAATCCATCCATTAAAGTCGTCGATGATGACTGC--TCGATGGTTTGAATAT 24936 Query 1013 CCGTCCCACCATAGTCCACGAGGTTTATAGTATAT 1047 | ||||||||| ||||| | || |||||||| Sbjct 24937 CAGTCCCACCAATTACCACGTGTCTTGTAGTATAT 24971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5506003505728