Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_025792.1 Length=1790 Score E Sequences producing significant alignments: (Bits) Value seq20204 100 3e-18 seq5653 91.5 2e-15 seq19940 82.4 9e-13 seq3046 82.4 9e-13 >seq20204 Length=425557 Score = 100 bits (110), Expect = 3e-18 Identities = 88/109 (81%), Gaps = 7/109 (6%) Strand=Plus/Plus Query 1011 GTACTTTGTAAGGGTATCTGTCAGTAATTTTGAGTAGTTCGTCGTATTTGATCCACCCGT 1070 |||| | |||||| |||||||| | ||||||||||||||||||||||| ||||| || | Sbjct 385 GTACCTGGTAAGGATATCTGTCCGATATTTTGAGTAGTTCGTCGTATTTAATCCATCCAT 444 Query 1071 AGAAGTCGTCGATGATGACGTTCTCTTGTTGCTTGTATCCGTCCCACCA 1119 |||| |||||||||||||| | |||| |||||||||||||| Sbjct 445 AGAAATCGTCGATGATGAC-TGCTCT------GAATATCCGTCCCACCA 486 >seq5653 Length=48260 Score = 91.5 bits (100), Expect = 2e-15 Identities = 112/148 (76%), Gaps = 5/148 (3%) Strand=Plus/Minus Query 999 CCCCCTTT-ATTTGTACTTTGTAAGGGTATCTGTCAGTAATTTTGAGTAGTTCGTCGTAT 1057 || ||||| || | || | ||||||||||| || | |||||||||| ||| || ||| Sbjct 24064 CCTCCTTTGATCGGAACCTGGTAAGGGTATCGATCTGATATTTTGAGTAATTCATCATAT 24005 Query 1058 TTGATCCACCCGTAGAAGTCGTCGATGATGACGTTCTCTTGTTGCTTG--TATCCGTCCC 1115 || ||||| || || ||||||||||||||||| | ||| | | ||| |||||||||| Sbjct 24004 TTAATCCATCCATAAAAGTCGTCGATGATGAC-TGCTC-GATGGTTTGAATATCCGTCCC 23947 Query 1116 ACCACAAGCCCCTTGGCTTGTAGTAGAT 1143 |||| || | || ||||||||| || Sbjct 23946 ACCAATTACCACGTGTCTTGTAGTATAT 23919 >seq19940 Length=92698 Score = 82.4 bits (90), Expect = 9e-13 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 1001 CCCTTTATTTG-TACTTTGTAAGGGTATCTGTCAGTAATTTTGAGTAGTTCGTCGTATTT 1059 ||||||| | | ||| ||||| |||||||| |||| ||| || | ||| |||||||| Sbjct 35854 CCCTTTAATAGGTACCTTGTATGGGTATCTATCAGCGATTCCAAGCAATTCATCGTATTT 35913 Query 1060 GATCCACCCGTAGAAGTCGTCGATGATGAC 1089 ||||| |||||||||||||| |||||||| Sbjct 35914 AATCCAACCGTAGAAGTCGTCAATGATGAC 35943 >seq3046 Length=880 Score = 82.4 bits (90), Expect = 9e-13 Identities = 92/122 (75%), Gaps = 6/122 (5%) Strand=Plus/Plus Query 1001 CCCTTTATTTGTACTTTGTAAGGGTATCTGTCAGTAATTTTGAGTAGTTCGTCGTATTTG 1060 || |||||| | |||||||| ||||| | |||| ||||| | ||| || |||||||| Sbjct 235 CCTTTTATTGGGACTTTGTAGGGGTAACGATCAGCTATTTTTAATAGCTCATCGTATTTC 294 Query 1061 ATCCACCCGTAGAAGTCGTCGATGATGACGTTCTCTTGTTGCTT---GTATCCGTCCCAC 1117 | ||| |||||||||||||| || || | | ||| || || ||||||||||||| Sbjct 295 AACCAGCCGTAGAAGTCGTCAATAATAA---TAGCTTTATGATTACAGTATCCGTCCCAC 351 Query 1118 CA 1119 || Sbjct 352 CA 353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5617979172608