Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_027530.1 Length=1789 Score E Sequences producing significant alignments: (Bits) Value seq19503 84.2 2e-13 seq5653 77.0 4e-11 >seq19503 Length=119187 Score = 84.2 bits (92), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 893 CCTTTAATCTGAACTTTATACGGATAACGATC-CATAATTTTAAGCATTTCATCATACTT 951 ||||| || |||| ||||| ||||| | ||| |||| ||||||| | ||||||||| || Sbjct 25312 CCTTTGATAGGAACCTTATAAGGATATCTATCACATA-TTTTAAGTAATTCATCATATTT 25370 Query 952 TATCCATCCATAGAAATCATCTATGATGACGCATGTTTGCTGAGCGTAGCCGTCCCACCA 1011 || ||| ||||| ||||||||||| || || | | || | | || || |||||||| Sbjct 25371 TAACCACCCATAAAAATCATCTATAATAACTGCTTTGTGGTTACAATAACCATCCCACCA 25430 Query 1012 GAGACCTCTAGGTTTGTA 1029 ||||| | |||||| Sbjct 25431 TTCACCTCGTGTTTTGTA 25448 >seq5653 Length=48260 Score = 77.0 bits (84), Expect = 4e-11 Identities = 111/153 (73%), Gaps = 8/153 (5%) Strand=Plus/Minus Query 887 AACCCTCCTTTAATCTGAACTTTATACGGATAACGATCCATAATTTTAAGCATTTCATCA 946 || |||||||| ||| |||| | || || || ||||| ||||| || | ||||||| Sbjct 24067 AAACCTCCTTTGATCGGAACCTGGTAAGGGTATCGATCTGATATTTTGAGTAATTCATCA 24008 Query 947 TACTTTATCCATCCATAGAAATCATCTATGATGAC-GC---ATGTTTGCTGAGCGTAGCC 1002 || || ||||||||||| || || || |||||||| || ||| || ||| || || Sbjct 24007 TATTTAATCCATCCATAAAAGTCGTCGATGATGACTGCTCGATGGTT--TGA--ATATCC 23952 Query 1003 GTCCCACCAGAGACCTCTAGGTTTGTAGTAAAT 1035 ||||||||| ||| | | |||||||| || Sbjct 23951 GTCCCACCAATTACCACGTGTCTTGTAGTATAT 23919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5614779867840