Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_027530.1
Length=1789
Score E
Sequences producing significant alignments: (Bits) Value
seq19503 84.2 2e-13
seq5653 77.0 4e-11
>seq19503
Length=119187
Score = 84.2 bits (92), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 893 CCTTTAATCTGAACTTTATACGGATAACGATC-CATAATTTTAAGCATTTCATCATACTT 951
||||| || |||| ||||| ||||| | ||| |||| ||||||| | ||||||||| ||
Sbjct 25312 CCTTTGATAGGAACCTTATAAGGATATCTATCACATA-TTTTAAGTAATTCATCATATTT 25370
Query 952 TATCCATCCATAGAAATCATCTATGATGACGCATGTTTGCTGAGCGTAGCCGTCCCACCA 1011
|| ||| ||||| ||||||||||| || || | | || | | || || ||||||||
Sbjct 25371 TAACCACCCATAAAAATCATCTATAATAACTGCTTTGTGGTTACAATAACCATCCCACCA 25430
Query 1012 GAGACCTCTAGGTTTGTA 1029
||||| | ||||||
Sbjct 25431 TTCACCTCGTGTTTTGTA 25448
>seq5653
Length=48260
Score = 77.0 bits (84), Expect = 4e-11
Identities = 111/153 (73%), Gaps = 8/153 (5%)
Strand=Plus/Minus
Query 887 AACCCTCCTTTAATCTGAACTTTATACGGATAACGATCCATAATTTTAAGCATTTCATCA 946
|| |||||||| ||| |||| | || || || ||||| ||||| || | |||||||
Sbjct 24067 AAACCTCCTTTGATCGGAACCTGGTAAGGGTATCGATCTGATATTTTGAGTAATTCATCA 24008
Query 947 TACTTTATCCATCCATAGAAATCATCTATGATGAC-GC---ATGTTTGCTGAGCGTAGCC 1002
|| || ||||||||||| || || || |||||||| || ||| || ||| || ||
Sbjct 24007 TATTTAATCCATCCATAAAAGTCGTCGATGATGACTGCTCGATGGTT--TGA--ATATCC 23952
Query 1003 GTCCCACCAGAGACCTCTAGGTTTGTAGTAAAT 1035
||||||||| ||| | | |||||||| ||
Sbjct 23951 GTCCCACCAATTACCACGTGTCTTGTAGTATAT 23919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5614779867840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |