Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_031755.1 Length=2229 Score E Sequences producing significant alignments: (Bits) Value seq19619 183 4e-43 seq5653 111 2e-21 seq17288 104 3e-19 seq17027 89.7 7e-15 seq1754 86.0 9e-14 seq20204 84.2 3e-13 seq1688 77.0 5e-11 >seq19619 Length=26659 Score = 183 bits (202), Expect = 4e-43 Identities = 345/503 (69%), Gaps = 12/503 (2%) Strand=Plus/Plus Query 227 CTCACATCGAACAAGCCAAGGGCACCGAACGTGCAAATTACAGGTATTGTACAAAATCTA 286 ||||||||||| |||| || ||| | || || ||||| | |||||| |||||||| Sbjct 23268 CTCACATCGAAAAAGCTAAACTAACCAACCGCGCCAATTATAAATATTGTTCAAAATCTG 23327 Query 287 ATTCATTTGAAGAATATGGCCAACAAAAAAGCCAGGGACAACGTTCTGATCTTGAA---- 342 ||||| | |||| || || | || || || ||| | || || || ||| Sbjct 23328 GAACATTTAATGAATTCGGAAAAATCCATAGTCAAGGCCAAAGATCGGACCTCGAAGCAG 23387 Query 343 CATGCCATCCACGAGCTG-CTACATGA-ACGACAACCTCTACAACAAGTGGCTGAAAATA 400 | ||||||| ||| |||||||| | ||| | | ||||||| | | || | | Sbjct 23388 CCTGCCATC-----GCTCACTACATGACAATGCAAGCAC-ACAACAAATTTCCCAAGAAA 23441 Query 401 ATCCAAGTGTTTTCGTACGTAACTTCCGAGGACTTCATGAACTTCGAAATCTTCTCATTC 460 | | ||| ||| ||| || | ||||||||||| || | |||||||||||| ||| Sbjct 23442 CTTCGTCCATTTACGTTCGTTACCACAGAGGACTTCATCAATTACGAAATCTTCTCGTTC 23501 Query 461 CCGTTAAACCTCGTGATTTTCGATCAGACGTTTACATCTTCATCGGCCCAACTAGAACTG 520 |||||| |||||| | | | |||| |||||||||||||| || ||||||||| || | Sbjct 23502 CCGTTACACCTCGCAACTATAGATCTGACGTTTACATCTTTATTGGCCCAACTCATACGG 23561 Query 521 GTAAATCCCAAGCTGCCAAATCTCTTGCTGGAGAATCAACCACATACTACAAAAATAGAA 580 | |||||| |||||| | | |||| | ||| | | |||| ||||| | Sbjct 23562 GAAAATCCAGAGCTGCTAGTAAAATGGCTGAAACCTCAGGTATACACTATAAAAACCGCT 23621 Query 581 GTAACTGGTGGCACGGATACCGACAAGAATCAACAGTCATCATCGACGACTTCTATGGAT 640 ||||||||| || | | ||| |||||| ||||| || ||||| |||||| Sbjct 23622 CATCATGGTGGCACAACTATCACCGGGAAAAAACAGTTATCATGGATGACTTTCATGGAT 23681 Query 641 GGATTAAATGGGATGAACTCCTCAAAATCTGCGATCGTTACCCCTACAAGGTGGAAACCA 700 || | |||||||||||| || ||||| || ||| | || |||||||| || | || | Sbjct 23682 GGTTACCATGGGATGAACTGCTTAAAATTTGTGATAGATATCCCTACAAAGTTGGGACGA 23741 Query 701 AAGGAGGATATGAAGAATTTACG 723 | ||||| | |||||||||||| Sbjct 23742 AGGGAGGCTTCGAAGAATTTACG 23764 >seq5653 Length=48260 Score = 111 bits (122), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 564 ATACTACAAAAATAGAAGTAACTGGTGGCACGGATACCGACAAGAATCAA-CAGTCATCA 622 ||||||||| | | |||| |||||| ||||||| | || ||| | ||||||||| Sbjct 23921 ATACTACAAGACACGTGGTAATTGGTGGGACGGATATTCA-AACCATCGAGCAGTCATCA 23979 Query 623 TCGACGACTTCTATGGATGGATTAAATGGGATGAACTCCTCAAAATCTGCGATCGTTACC 682 |||||||||| |||||||||||||||| |||||| | |||||||| | ||||| |||| Sbjct 23980 TCGACGACTTTTATGGATGGATTAAATATGATGAATTACTCAAAATATCAGATCGATACC 24039 Query 683 CCTACAAGGTGGAAACCAAAGGAGG 707 | ||| |||| | ||||||||| Sbjct 24040 CTTACCAGGTTCCGATCAAAGGAGG 24064 Score = 95.1 bits (104), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 564 ATACTACAAAAATAGAAGTAACTGGTGGCACGGATACCGACAAGAATCAA-CAGTCATCA 622 ||||||||| | | |||| |||||| || |||| | || ||| | ||||||||| Sbjct 24969 ATACTACAAGACACGTGGTAATTGGTGGGACTGATATTCA-AACCATCGAGCAGTCATCA 24911 Query 623 TCGACGACTTCTATGGATGGATT----AAATGGGATGAACTCCTCAAAATCTGCGATCGT 678 |||||||||| ||||||||||| |||| |||||| | |||||||| | ||||| Sbjct 24910 TCGACGACTTTAATGGATGGATTAAATAAATATGATGAATTACTCAAAATATCAGATCGA 24851 Query 679 TACCCCTACAAGGTGGAAACCAAAGGAGG 707 ||||| ||| |||| | | ||||||||| Sbjct 24850 TACCCTTACCAGGTTCAGATCAAAGGAGG 24822 >seq17288 Length=56602 Score = 104 bits (114), Expect = 3e-19 Identities = 196/285 (69%), Gaps = 5/285 (2%) Strand=Plus/Plus Query 458 TTCCCGTTAAACCTCGTGATTTTCGATCAGACGTTTACATCT-TCATCGGCCCAACTAGA 516 |||| |||||||| ||||||||| |||| || ||||| || | | || | || | ||||| Sbjct 40349 TTCCAGTTAAACCCCGTGATTTTAGATCCGATGTTTATATTTCTTATAGACCTA-CTAGA 40407 Query 517 ACTGGTAAATCCCAAGCTGCCAAATCTCTTGCTGGAGAATCAACCACATACTACAAAAAT 576 ||||||||||| | || || | | | ||||| || | || |||||| |||||| Sbjct 40408 ACTGGTAAATCACGTGCAGCTAGACAAATGGCTGGTGATTTGTCCGTATACTATAAAAAT 40467 Query 577 AGAAGTAACTGGTGGCACGGATACCGACAAGAATCAACAGTCATCATCGACGACTTCTAT 636 ||| | ||||||| || | ||||| | ||||| | || || || ||| Sbjct 40468 AGATCTCCTTGGTGGCGTAATTATCAACAAGGAGATGTTGTCATTCTGGATGATTTTTAT 40527 Query 637 GGATGGATTAAATGGGATGAACTCCTCAAAATCTGCGATCGTTACCCCTACAAGGTGGAA 696 | |||||| | ||||||||| | |||| |||||||| || || || | ||| Sbjct 40528 AGTTGGATTCCTTAGGATGAACTTTTAAAAA---ATGATCGTTATCCTTATAAAATCGAA 40584 Query 697 ACCAAAGGAGGATATGAAGAATTTACGAGCCAAACTATTATCATT 741 | |||||| | | |||||||||||| ||| |||||| ||| Sbjct 40585 ATTAAAGGAAGCTTTGAAGAATTTACTTCGAAAATTATTATTATT 40629 >seq17027 Length=187710 Score = 89.7 bits (98), Expect = 7e-15 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 564 ATACTACAAAAATAGAAGTAACTGGTGGCACGGATACCGACAAGAATCAACAGTCATCAT 623 ||| ||||| ||||| | | |||||||| || | ||| || ||| ||||| | Sbjct 3911 ATAGTACAAGAATAGGTCTCAATGGTGGCATAACTATCAACAGGAGGAAACGGTCATTTT 3852 Query 624 CGACGACTTCTATGGATGGATTAAATGGGATGAACTCCTCAAAATCTGCGATCGTTACCC 683 |||||||| ||||||||| || ||| |||||||||||| |||||||||||| |||| Sbjct 3851 AGACGACTTTTATGGATGGCTTCCATGAAATGAACTCCTCACAATCTGCGATCGGTACCG 3792 Query 684 CTACAAGGTGGAAACCAAAGGAGGATATGAAGAATT 719 || | || |||| |||||| | |||||||| Sbjct 3791 ATATCAAGTTGAAA--AAAGGATCCCACGAAGAATT 3758 >seq1754 Length=178659 Score = 86.0 bits (94), Expect = 9e-14 Identities = 134/191 (70%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 586 TGGTGGCACGGATACCGACAAGAATCAACAGTCATCATCGACGACTTCTATGGATGGATT 645 |||||||| | || | | | || ||||||||| | || ||||| || |||||||| Sbjct 128412 TGGTGGCATAGTTATCAAGAGGAGGAAACAGTCATTTTGGATGACTTTTACGGATGGATC 128353 Query 646 AAATGGGATGAACTCCTCAAAATCTGCGATCGTTACCCCTACAAGGTGGAAACCAAAGGA 705 ||||| || | || ||||||||||| ||||| |||| || || |||| ||| | Sbjct 128352 CCCTGGGACGAGTTACTTAAAATCTGCGACCGTTATTCCTATAAAGTCGAAAAAAAAAAA 128293 Query 706 GGAT---ATGAAGAATTTACGAGCCAAACTATTATCATTACAAGCAATACGCCCCCGGAA 762 |||| ||||||| ||||| |||| ||||| ||||| ||| | | ||| ||| Sbjct 128292 GGATCCCATGAAGAGTTTACCTCAAAAACAATTATTATTACCTCAAATGCTCACCCAGAA 128233 Query 763 ACGTGGTATAA 773 | ||||| || Sbjct 128232 AACTGGTACAA 128222 >seq20204 Length=425557 Score = 84.2 bits (92), Expect = 3e-13 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 614 CAGTCATCATCGACGACTTCTATGGATGGATTAAATGGGATGAACTCCTCAAAATCTGCG 673 |||||||||||||||| ||||||||||||||||||| || ||||| |||||||| | | Sbjct 465 CAGTCATCATCGACGATTTCTATGGATGGATTAAATACGACGAACTACTCAAAATATCGG 406 Query 674 ATCGTTACCCCTACAAGGTGGAAACCAAAGGAGGATATG 712 | | || || ||| |||| ||||||||||| || Sbjct 405 ACAGATATCCTTACCAGGTACCGGTCAAAGGAGGATTTG 367 >seq1688 Length=37066 Score = 77.0 bits (84), Expect = 5e-11 Identities = 71/90 (79%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 411 TTTCGTACGTAACTTCCGAGGACTTCATGAACTTCGAAATCTTCTCATTCCCGTTAAACC 470 |||||| ||| || ||||||| | |||||| |||||||| | || |||| |||| Sbjct 29758 TTTCGTTCGTTACCACCGAGGATTATCTGAACTACGAAATCTCTTGGTTTTCGTTGAACC 29817 Query 471 TCGTGATTTTCGATCAGACGTTTACATCTT 500 |||| |||||||||| ||||||||||||| Sbjct 29818 TCGTAATTTTCGATCGAACGTTTACATCTT 29847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7022473965760