Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq5342 398 3e-107 >seq5342 Length=1115 Score = 398 bits (440), Expect = 3e-107 Identities = 532/731 (73%), Gaps = 13/731 (2%) Strand=Plus/Plus Query 1401 AACTGACCCAAGTGGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCA 1460 |||| ||| | |||||||||||| ||| ||||||||| | || |||||||||||||| | Sbjct 363 AACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAA 422 Query 1461 AGAAAGAGCTCAAATCGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAAC 1520 | | |||| | | || |||||||| ||| |||| ||||||||||||| |||||||| Sbjct 423 AAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAAC 482 Query 1521 CTGTGACGACGAATCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCA 1580 |||||||||| |||||||| ||||| |||||| || || || || || | |||| Sbjct 483 CTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCA 542 Query 1581 ACCTACAGAGTTTTATCGCTTCAATGACCACGAAATTAACAAGTACGGATATTTCTGATG 1640 |||| ||||||||||||||||| ||||| ||| |||||| | ||||||||||||||| Sbjct 543 ACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATG 602 Query 1641 AAACCAAAAACTACGTTGCTTCTGCAGGAATTGCTGTTGCTAACTTACGAATTAAATCGA 1700 | | ||||| || ||| | ||||||||| || |||| |||||||||||||||| Sbjct 603 AGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGA 662 Query 1701 AGTGGACTGCTGGTGGAAAATGAGGAAATTCAATCTCAACTTAAAAAACTCGAGGTCGTC 1760 ||||||||||||| |||||||||| |||||| | || ||| | |||||| || Sbjct 663 AGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTC 722 Query 1761 TTACTTTGCAACCTTTCGCCATCATCTCAACG-TGCTGGCAAAAACTGACGCCCTTGACG 1819 ||||||||| |||||||||||||| || |||| | ||| ||||||||||||| | || | Sbjct 723 TTACTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATG 781 Query 1820 AGGAGAAATACTTAAATATGTTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAAC 1879 ||||||| | | |||||| | || | || ||||||||||||| | || || || Sbjct 782 AGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCAC 841 Query 1880 ATTTCGTGCATGGTAAACAATCAATGCTTGACATACTGAAAGAACGTGGCCTATTATCCA 1939 |||| || ||||||| | | || | ||||||| | ||||| ||||| || |||| Sbjct 842 ATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTG 901 Query 1940 CATCGTCAACTGACACAAACCAC--AAAGGAAACTGAAATGTCTAAATCAA---AC-GAA 1993 || ||| |||||| | ||| || ||||| | | |||| || ||| Sbjct 902 AGTCCGATGCTG--TTCAACCACTAATAGGTAA--GAAAT-CATGAGTCAAGTTACTGAA 956 Query 1994 TCTGCTGTAGCCTTTCAAACTGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGTT 2053 | ||| || || || ||| | || ||||| || || ||||| || ||| | ||| Sbjct 957 CAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTT 1016 Query 2054 CTTGACTTGACAGAGGACGATTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTACC 2113 | || || || || || ||||| || || | || | || || ||||||||||| Sbjct 1017 TTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACT 1076 Query 2114 GACCGTTCACG 2124 ||||| || || Sbjct 1077 GACCGATCTCG 1087 Score = 291 bits (322), Expect = 3e-75 Identities = 256/319 (80%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 1413 TGGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTCA 1472 |||||||||||| ||| ||||||||| | || |||||||||||||| || | |||| | | Sbjct 11 TGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGA 70 Query 1473 AATCGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCTGTGACGACGA 1532 || |||||||| ||| |||| ||||||||||||| |||||||||||||||||| | Sbjct 71 GATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAA 130 Query 1533 ATCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAACCTACAGAGTT 1592 ||||||| ||||| |||||| || || || || || | |||||||| ||||||| Sbjct 131 ATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTT 190 Query 1593 TTATCGCTTCAATGACCACGAAATTAACAAGTACGGATATTTCTGATGAAACCAAAAACT 1652 |||||||||| ||||| ||| |||||| | |||||||||||||||| | ||||| | Sbjct 191 TTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATT 250 Query 1653 ACGTTGCTTCTGCAGGAATTGCTGTTGCTAACTTACGAATTAAATCGAAGTGGACTGCTG 1712 | ||| | ||||||||| || |||| |||||||||||||||||||||||||||| Sbjct 251 ATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTG 310 Query 1713 GTGGAAAATGAGGAAATTC 1731 | |||||||||| |||||| Sbjct 311 GCGGAAAATGAGAAAATTC 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17733161695520