Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_001422.1 Length=5386 Score E Sequences producing significant alignments: (Bits) Value seq5342 967 0.0 >seq5342 Length=1115 Score = 967 bits (1072), Expect = 0.0 Identities = 538/539 (99%), Gaps = 0/539 (0%) Strand=Plus/Plus Query 1 GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 550 GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAA 609 Query 61 AAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGAC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 610 AAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGAC 669 Query 121 TGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 670 TGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTT 729 Query 181 GCGACCTTTCGCCATCAACTAACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 730 GCGACCTTTCGCCATCAACTAACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAG 789 Query 241 TGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 790 TGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTT 849 Query 301 CATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGAT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 850 CATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGAT 909 Query 361 GCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 910 GCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTT 969 Query 421 TCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 970 TCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCG 1029 Query 481 AAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGT 539 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1030 AAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGATCTCGT 1088 Score = 389 bits (430), Expect = 1e-104 Identities = 215/215 (100%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 5172 ACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCG 5231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 335 ACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCG 394 Query 5232 TTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTT 5291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 395 TTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTT 454 Query 5292 ACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGC 5351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 455 ACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGC 514 Query 5352 GCTTCGATAAAAATGATTGGCGTATCCAACCTGCA 5386 ||||||||||||||||||||||||||||||||||| Sbjct 515 GCTTCGATAAAAATGATTGGCGTATCCAACCTGCA 549 Score = 318 bits (352), Expect = 2e-83 Identities = 176/176 (100%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 5211 CTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATG 5270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10 CTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATG 69 Query 5271 AGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACA 5330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 70 AGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACA 129 Query 5331 AATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA 5386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 AATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA 185 Score = 271 bits (300), Expect = 3e-69 Identities = 150/150 (100%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 1 GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAA 245 Query 61 AAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGAC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 AAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGAC 305 Query 121 TGCTGGCGGAAAATGAGAAAATTCGACCTA 150 |||||||||||||||||||||||||||||| Sbjct 306 TGCTGGCGGAAAATGAGAAAATTCGACCTA 335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17122004372560