Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq5342 448 2e-122 >seq5342 Length=1115 Score = 448 bits (496), Expect = 2e-122 Identities = 546/739 (74%), Gaps = 23/739 (3%) Strand=Plus/Plus Query 1395 TAATCCAACTGACCCAAGTGGGCTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGA 1454 |||||||||| ||| | |||| ||||||| ||| ||||||||| | || |||||||||| Sbjct 357 TAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGA 416 Query 1455 ACGCCAAGAAAGAGCTACGATTGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGG 1514 |||| || | |||| | |||||||||||| ||| |||| ||||||||||||| || Sbjct 417 ACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGG 476 Query 1515 CGCAACCTGTGACGACCAATCTGCTAAAATTCATGCGCAATTTGACCCGTCAAA----TC 1570 |||||||||||||||| |||||||| ||||| |||||| || || | ||| | Sbjct 477 CGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGA----TAAAAATGATT 532 Query 1571 GGAGTGTCCAACCTGCAGAGTTTTATCGCTTCAATGACAACGAAATTAACAAGTATGGAT 1630 || || |||||||||||||||||||||||||| ||||| ||| |||||| | |||| Sbjct 533 GGCGTATCCAACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGAT 592 Query 1631 ATTTCTGATGAAACCAAAAACTACGTTGATACTGCAGGAATTACTGCTACTCACTTACGA 1690 ||||||||||| | ||||| || |||||| |||||||||||| || || |||||| Sbjct 593 ATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGA 652 Query 1691 ATTAAATCGAAGTGGACTGCTGGTGGAAAATGAAGAAATTCAATCTGAACTTAAAAAATT 1750 ||||||||||||||||||||||| ||||||||| |||||| | || ||| | | Sbjct 653 ATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCT 712 Query 1751 CGAGAAGCTCTTACTTCGCCACCTTTCGCCATCACCTGAACG-TACTGGCAAAGACTGAC 1809 |||||||||||||||| || |||||||||||||| || |||| | ||| |||| |||||| Sbjct 713 CGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGAC 771 Query 1810 GCTCTCGACGAGGAAAAATACCTAAATATGCTAGGTGCTCTCCTCAAGGACTGGTTCCGT 1869 || | || ||||| || | || |||||||| || | || ||||||||||||| | Sbjct 772 GCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGA 831 Query 1870 TACGAAGAACATTTCGTACATGGTAAACAATCAATGCTTGACTTATTAAATGAACGTGGA 1929 || || |||||| || ||||||| | | || | ||||| | ||||| || |||||| Sbjct 832 TATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGA 891 Query 1930 CTATTATC-----CACA---TCAACAACCAACCCAAAAGGAAATACAAAATGA---ACTC 1978 || |||| | | | |||||| | || ||| || | | |||| | Sbjct 892 TTACTATCTGAGTCCGATGCTGTTCAACCA--CTAATAGGTAAGAAATCATGAGTCAAGT 949 Query 1979 TAACGAATCTGCTGTTGCCTTCGCTACTGCTCTCGCATCTATCAAGCTCATTCAGGCTTC 2038 || ||| | || ||| || ||| | || ||||| ||||||||||||||||| Sbjct 950 TACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTC 1009 Query 2039 ATCTGTGCTGGACCTGACCGAAGACGACTTCGATTTCTTAACCCGTGACCGTGTATGGAT 2098 | || |||| | |||||||| || |||||||| | || || || || ||||| Sbjct 1010 TGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGAT 1069 Query 2099 TGCCACTGACCGCTCCCGT 2117 ||| |||||||| || ||| Sbjct 1070 TGCTACTGACCGATCTCGT 1088 Score = 297 bits (328), Expect = 7e-77 Identities = 260/323 (80%), Gaps = 8/323 (2%) Strand=Plus/Plus Query 1413 TGGGCTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTAC 1472 |||| ||||||| ||| ||||||||| | || |||||||||||||| || | |||| | Sbjct 11 TGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGA 70 Query 1473 GATTGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCTGTGACGACCA 1532 |||||||||||| ||| |||| ||||||||||||| |||||||||||||||||| | Sbjct 71 GATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAA 130 Query 1533 ATCTGCTAAAATTCATGCGCAATTTGACCCGTCAAA----TCGGAGTGTCCAACCTGCAG 1588 ||||||| ||||| |||||| || || | ||| | || || |||||||||||| Sbjct 131 ATCTGCTCAAATTTATGCGCGCTTCGA----TAAAAATGATTGGCGTATCCAACCTGCAG 186 Query 1589 AGTTTTATCGCTTCAATGACAACGAAATTAACAAGTATGGATATTTCTGATGAAACCAAA 1648 |||||||||||||| ||||| ||| |||||| | ||||||||||||||| | ||| Sbjct 187 AGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAA 246 Query 1649 AACTACGTTGATACTGCAGGAATTACTGCTACTCACTTACGAATTAAATCGAAGTGGACT 1708 || || |||||| |||||||||||| || || |||||||||||||||||||||||| Sbjct 247 AATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACT 306 Query 1709 GCTGGTGGAAAATGAAGAAATTC 1731 ||||| ||||||||| |||||| Sbjct 307 GCTGGCGGAAAATGAGAAAATTC 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17441982028560