Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq5342 443 7e-121 >seq5342 Length=1115 Score = 443 bits (490), Expect = 7e-121 Identities = 553/752 (74%), Gaps = 12/752 (2%) Strand=Plus/Plus Query 1385 CTGACCGCGGAGTGTTTAATCCAACTGACCCAAGTGGGTTACGACGTGACCCCGTTCAAC 1444 ||| || ||||||| ||||||||||| ||| | |||||||||||| ||| ||||||||| Sbjct 341 CTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAAC 400 Query 1445 AACATCTTGAAGCAGAACGCCAAGAAAGAGCTACGATTGAGGCTGGCAAAGCAATCTGTA 1504 | || |||||||||||||| || | |||| | |||||||||||| ||| ||||| Sbjct 401 CAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTA 460 Query 1505 GCCGACGTTTTGGAGGCGCAACCTGTGACGACCAATCTGCTAAAATTCATGCGCAATTTG 1564 ||||||||||||| |||||||||||||||||| |||||||| ||||| |||||| || | Sbjct 461 GCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCG 520 Query 1565 ACCCGAACAATCGGAGCGTCCAGCCTACAGAGTTTTATCGCTTCAATGACGCAGAAATTA 1624 | || || || | |||| ||| ||||||||||||||||| ||||||||||| ||| Sbjct 521 ATAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTA 580 Query 1625 GCAAATACGGATATTTCTGATGAAACTAAAAACTACGTTACTAATGCAGGAATTGCTGTT 1684 || | |||||||||||||||| | ||||| || || ||| ||||||||| || | Sbjct 581 ACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACT 640 Query 1685 GCTGACTTACGACTTAAATCGAAGTGGACTGCTGGTGGAAAATGAAGAACTTCAATCTCA 1744 ||| |||||| |||||||||||||||||||||| ||||||||| || ||| | || Sbjct 641 GCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTAT 700 Query 1745 ACTTAAAGAACTCGAGGGCGTCTTACTTCGCAACCTTTCGCCATCATCTCAACG-TGGTA 1803 ||| | |||||| |||||||| || |||||||||||||| || |||| | | Sbjct 701 CCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACT-AACGATTCTG 759 Query 1804 GCAAAGACTGACGCGCTTGATGAAGAAAAATGGCTCAATATGATGGGCGCTCTTCTTAAG 1863 |||| ||||||||| | ||||| || || ||||| |||||| | ||| | | | ||| Sbjct 760 TCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAG 819 Query 1864 GACTGGTTCCGCTATGAACAACATTTCGTACATGGCAAAGAATCAATGCTTGACATTCTA 1923 |||||||| | ||||| |||||| || ||||| | ||| || | |||||||| || Sbjct 820 GACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTA 879 Query 1924 AATGAACGTGGCCTATTATCCACCTTGCCAAATG--GCTTAAC--TTACAAAGGAATCAA 1979 || || ||||| || ||| | | | ||| | | ||| || | | || || Sbjct 880 AAAGAGCGTGGATTACTAT---CTGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAA 936 Query 1980 AAATGA---AAGCAAATGAGAACGCAGTAGCCTTTCAAACCGCTATTGCCTCCATCAAAC 2036 |||| ||| | ||| | | ||| || || |||||| | ||||| || || | Sbjct 937 TCATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGC 996 Query 2037 TTATTCAGGCATCTTCTGTTCTTGACCTGACTGAGGACGATTTCGAATTCTTAACTCGTG 2096 | |||||||| ||| | ||| | || | || || || |||||||| || | || || Sbjct 997 TCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTA 1056 Query 2097 ACCGTGTATGGATTGCAACTGACCGCTCCCGT 2128 || || |||||||| |||||||| || ||| Sbjct 1057 ACAAAGTTTGGATTGCTACTGACCGATCTCGT 1088 Score = 297 bits (328), Expect = 7e-77 Identities = 257/319 (81%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 1419 TGGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTAC 1478 |||||||||||| ||| ||||||||| | || |||||||||||||| || | |||| | Sbjct 11 TGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGA 70 Query 1479 GATTGAGGCTGGCAAAGCAATCTGTAGCCGACGTTTTGGAGGCGCAACCTGTGACGACCA 1538 |||||||||||| ||| |||||||||||||||||| |||||||||||||||||| | Sbjct 71 GATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAA 130 Query 1539 ATCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAGCCTACAGAGTT 1598 ||||||| ||||| |||||| || || || || || | |||| ||| ||||||| Sbjct 131 ATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTT 190 Query 1599 TTATCGCTTCAATGACGCAGAAATTAGCAAATACGGATATTTCTGATGAAACTAAAAACT 1658 |||||||||| ||||||||||| ||| || | |||||||||||||||| | ||||| | Sbjct 191 TTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATT 250 Query 1659 ACGTTACTAATGCAGGAATTGCTGTTGCTGACTTACGACTTAAATCGAAGTGGACTGCTG 1718 | || ||| ||||||||| || |||| |||||| ||||||||||||||||||||| Sbjct 251 ATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTG 310 Query 1719 GTGGAAAATGAAGAACTTC 1737 | ||||||||| || ||| Sbjct 311 GCGGAAAATGAGAAAATTC 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17441982028560