Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_001330.1
Length=6087
Score E
Sequences producing significant alignments: (Bits) Value
seq10094 841 0.0
>seq10094
Length=2757
Score = 841 bits (932), Expect = 0.0
Identities = 1031/1403 (73%), Gaps = 61/1403 (4%)
Strand=Plus/Plus
Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619
|||||| ||| ||||||||| | || || || ||||||||||||||||| || | ||
Sbjct 1357 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 1416
Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679
||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 1417 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 1476
Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1477 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 1536
Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799
|||||||||||||||||||||||||| | ||||| || || ||| | |||||||||||
Sbjct 1537 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 1596
Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859
|| |||| ||||||||||| |||||||||||||| |||||||| |||||||| | |||
Sbjct 1597 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 1656
Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919
|||| ||| ||||| | |||||| || || | | | || || || |||||
Sbjct 1657 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 1716
Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGATATG--AAG--AAAGCACGT---- 2971
| ||||| |||||||| ||| | ||| ||| || || | ||| ||| ||||
Sbjct 1717 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTG 1776
Query 2972 -CGTTCTCC-TAGTCGTC------------------------------GTAAAGGTGCTC 2999
|| || || | |||||| ||||||| ||||
Sbjct 1777 GCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTC 1836
Query 3000 GCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTATGGGCCCTTCGGGGCCTT--TTAAG 3057
| || ||||||||||| ||| || |||||||| || |||||| |||| || ||
Sbjct 1837 GTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAG 1896
Query 3058 GA--AATTCAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTCTCTC 3115
|| |||| ||||||||| | |||||| ||| || ||| |||||| || |
Sbjct 1897 GATAAATT---ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCC 1953
Query 3116 ATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCATGGACTCCTGT 3173
|||||| ||| | ||| | || | |||||||||| | || ||||| ||||| ||
Sbjct 1954 ATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 2011
Query 3174 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCCCCTCTGCG 3233
|||||||||||| ||||| ||| | || || ||||| ||| | |||||||| || ||||
Sbjct 2012 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCG 2071
Query 3234 TCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCACCTTCTACATTCCGCATCGTCA 3293
|||||| | |||||||| |||| || || |||| || || || | || ||||||||
Sbjct 2072 TCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCA 2131
Query 3294 TGTTTATGGCGACCAGTGGATTCAGTTTATGCGTGATGGTGTTAATGCTCAGCCTCTGCC 3353
|||||||| || ||||||||| |||| ||| |||||||||||||| ||||| ||
Sbjct 2132 CGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCC 2191
Query 3354 TTCTGTTACT--TGCAATCGCTATCCGGACCATGCTGGTTATGTAGGTACTATTGTTCCT 3411
|||||| ||| | | ||| |||||||| | || | | || || ||| |||
Sbjct 2192 GACTGTTAACACTGC--TGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCT 2249
Query 3412 G---CAAATAACCGTATTCCTAAGTTTTTGCATCAGAGCTATCTGAACATTTACAATAAC 3468
| | ||||| || |||||| |||| |||| | ||| |||| || || || |||
Sbjct 2250 GATACCAATAAA---ATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAAC 2306
Query 3469 TATTTCCGTGCCCCGTGGATGCCTGAGCGTACCGAGGCCAACCCGTCTAATCTTAATGAG 3528
||||| || |||||||||||||| ||||||||||| ||||| | | |||||| |
Sbjct 2307 TATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAA 2366
Query 3529 GATGATGCTCGTTATCGCTTCCGTTGCTGCCACCTTAAAAATATTTGGTCTGCTCCGCTG 3588
||||||||||||||| | |||||||||||||| || ||||| |||||| ||||||||||
Sbjct 2367 GATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTT 2426
Query 3589 CCTCCGGAAACCAAATTGGCTGAAGAAATGGGTATTGAAAGCAATTCCATTGATATTATG 3648
||||| || || | | || ||||| | | | || || ||||| ||||||
Sbjct 2427 CCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATG 2486
Query 3649 GGTTTGCAAGCCGCTTATGCGCAGCTTCACACTGAGCAGGAGCGTACTTACTTTATGCAG 3708
||| ||||||| |||||||| | | || ||||| || || ||| |||||| ||||||
Sbjct 2487 GGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAG 2546
Query 3709 CGTTACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGA 3768
||||||| ||||||||| || ||||| ||| |||||| ||||| || || |||||
Sbjct 2547 CGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGT 2606
Query 3769 CCGTTGCTTGTTATGCACACCGACTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGAC 3828
|| || ||||| |||| | | | ||||||| || || || || ||||| || || |||
Sbjct 2607 CCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGAC 2666
Query 3829 CAATCTTCCCTTGGACAATTCTCTGGTCGAGTCCAGCAGACGTTTAAACACTCAGTGCCG 3888
||| | || | || || || |||||||| || || ||||| | |||||| || ||||||
Sbjct 2667 CAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCG 2726
Query 3889 CGATTCTTCGTGCCTGAGCATGG 3911
|| ||||| || |||||||||||
Sbjct 2727 CGTTTCTTTGTTCCTGAGCATGG 2749
Score = 174 bits (192), Expect = 6e-40
Identities = 280/398 (70%), Gaps = 6/398 (2%)
Strand=Plus/Plus
Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352
|| ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| ||
Sbjct 81 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 140
Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412
|| || ||||||||| | ||||| ||||| | | ||||||| ||||| ||
Sbjct 141 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 200
Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472
|| ||||| || || ||||| || ||||||||||| ||| |||||||||| |||
Sbjct 201 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 260
Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530
| || | |||| | ||||||||||||| || | ||||| | ||||||| ||||
Sbjct 261 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 318
Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590
|| || || |||||||||||| ||||| |||||| ||| |||||| |||| |
Sbjct 319 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 377
Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649
| || | | |||||||||||| | || || || || |||||||| ||
Sbjct 378 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 437
Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687
||||||| ||| || |||||| |||||||||||||
Sbjct 438 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19356292420440
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