Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_001420.2
Length=5577
Score E
Sequences producing significant alignments: (Bits) Value
seq10094 1471 0.0
>seq10094
Length=2757
Score = 1471 bits (1630), Expect = 0.0
Identities = 2009/2783 (72%), Gaps = 54/2783 (2%)
Strand=Plus/Plus
Query 684 TGGAGGAGTCAACTATGAAGTCTCGACGTGGCTTTACCGTTCAAAGATTAATGAATGCTA 743
|||||| || |||||||| || || | |||||| | |||| | || |||||||| |
Sbjct 1 TGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAA 60
Query 744 TGCGTACTGCCCATTCTAAGGGCTGGTATGTCGTATTCGATACTCTTACTCTAGCCGATG 803
|||| || ||| || | || |||| | |||| || || ||||| || | || || |
Sbjct 61 TGCGACAGGCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACG 120
Query 804 ACCGCTTAAAGGATTTCTATGATAATCCCAATGCTCTTCGTGACTACTTCCGTGATATTG 863
|||| ||| ||| || |||||||||||||||||| | |||||||| || ||||||||||
Sbjct 121 ACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTG 180
Query 864 GTCGTATGGTGCTTACTGCCGAAGGTCGCTCGGTGCATGACTCATCTTCCGACTGCTATC 923
|||||||||| ||| ||||||| |||||| || |||| ||| ||||||||||||
Sbjct 181 GTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATC 240
Query 924 AGTATTTTTGTGTGCCAGAGTATGGTACACAGCACGGTCGTCTACATTTCCACGCAGTGC 983
|||||||||||||||| |||||||||||| | || ||||| |||||||| || ||||
Sbjct 241 AGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGC 300
Query 984 ATCTTATGCGCACACTTCCTCTGGGTTCTCTGCACCCTAACTTCGGTAAGCTGGTACGCA 1043
| ||||||| ||||||||| ||| | ||||||| || ||| | ||||||||
Sbjct 301 ACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCA 360
Query 1044 TCAATCGGCAAATAAATAGCTTGCAAAACACGTGGCCTTATGGTTACTCTATGCCCATCG 1103
|| || |||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 361 ATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCG 420
Query 1104 CAGTCCGGTACTCCCAAGACGCATTCTCTCGCGCTGGCTGGCTCTGGCCTGTGGACTCAA 1163
|||| || ||| | || ||||| || || || |||| ||| | |||||||| || | |
Sbjct 421 CAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTA 480
Query 1164 AGGGTGAACCCCTTAAAGCTACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATACG 1223
| ||||| || |||||||||||| ||||||||||| || ||||| || ||||||||||
Sbjct 481 AAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACG 540
Query 1224 TTAACAAAAAATCAGATATTGACATGGCCGTAAAAGGCCTAGGGAATAAAGAATGGAACA 1283
|||||||||| |||||||| ||| | || | ||||| ||||| ||||||||||||||
Sbjct 541 TTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACA 600
Query 1284 ATTCACTCAAAACCAAAATCAACCTCATACCCAAGAAAGTGTTCAGAATACGAATGTCTC 1343
| ||||| |||||||| | || | |||||||| |||||||||| ||||| |
Sbjct 601 ACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCC 660
Query 1344 GCAATTTCGGAATGAAACTGTTATCAATGGCTCACCTGTCAGCGGAAACCCTGATGGAAC 1403
|||| ||||| |||||| || | ||||| | | ||||| |||| | | || |||
Sbjct 661 GCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAAC 720
Query 1404 TGACCCAAGTGGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGA 1463
| ||| | |||||||||||| ||| ||||||||| | || |||||||||||||| || |
Sbjct 721 TTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAA 780
Query 1464 AAGAGCTCAAATCGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCTG 1523
|||| | | || |||||||| ||| |||| ||||||||||||| |||||||||||
Sbjct 781 GAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTG 840
Query 1524 TGACGACGAATCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAACC 1583
||||||| |||||||| ||||| |||||| || || || || || | |||||||
Sbjct 841 TGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACC 900
Query 1584 TACAGAGTTTTATCGCTTCAATGACCACGAAATTAACAAGTACGGATATTTCTGATGAAA 1643
| ||||||||||||||||| ||||| ||| |||||| | ||||||||||||||||
Sbjct 901 TGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGT 960
Query 1644 CCAAAAACTACGTTGCTTCTGCAGGAATTGCTGTTGCTAACTTACGAATTAAATCGAAGT 1703
| ||||| || ||| | ||||||||| || |||| |||||||||||||||||||
Sbjct 961 CGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGT 1020
Query 1704 GGACTGCTGGTGGAAAATGAGGAAATTCAATCTCAACTTAAAAAACTCGAGGTCGTCTTA 1763
|||||||||| |||||||||| |||||| | || ||| | |||||| |||||
Sbjct 1021 GGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTA 1080
Query 1764 CTTTGCAACCTTTCGCCATCATCTCAACG-TGCTGGCAAAAACTGACGCCCTTGACGAGG 1822
|||||| |||||||||||||| || |||| | ||| ||||||||||||| | || ||||
Sbjct 1081 CTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGG 1139
Query 1823 AGAAATACTTAAATATGTTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAACATT 1882
|||| | | |||||| | || | || ||||||||||||| | || || |||||
Sbjct 1140 AGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATT 1199
Query 1883 TCGTGCATGGTAAACAATCAATGCTTGACATACTGAAAGAACGTGGCCTATTATCCACAT 1942
| || ||||||| | | || | ||||||| | ||||| ||||| || |||| |
Sbjct 1200 TTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGT 1259
Query 1943 CGTCAACTGACACAAACCAC--AAAGGAAACTGAAATGTCTAAATCAA---AC-GAATCT 1996
| ||| |||||| | ||| || ||||| | | |||| || |||
Sbjct 1260 CCGATGCTG--TTCAACCACTAATAGGTAA--GAAAT-CATGAGTCAAGTTACTGAACAA 1314
Query 1997 GCTGTAGCCTTTCAAACTGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGTTCTT 2056
| ||| || || || ||| | || ||||| || || ||||| || ||| | ||| |
Sbjct 1315 TCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTG 1374
Query 2057 GACTTGACAGAGGACGATTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTACCGAC 2116
|| || || || || ||||| || || | || | || || ||||||||||| |||
Sbjct 1375 GATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGAC 1434
Query 2117 CGTTCACGCGCTCGCCG-TGCTATCGAGGCTTGCGTATATGGAACACTGGACTTTGTCGG 2175
|| || || ||||| || ||| | ||||||||||| ||||| || ||||||||||| ||
Sbjct 1435 CGCTCTCGTGCTCGTCGCTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGG 1493
Query 2176 GTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGTTCA 2235
|| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1494 ATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCA 1553
Query 2236 TCCCGTTAACATCCAAACCGCCTGTCTCATCATGGAAGGTGCTGAGTTTACCGAAAACAT 2295
|||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1554 TCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACAT 1613
Query 2296 CGTCAATGGTGTTGAACGCCCCGTTAAAGCCTCTGAACTGTTCGCCTTCACTCTTCTTGT 2355
| ||||| || || || || ||||||||| ||||| ||||||| || || | | |||
Sbjct 1614 TATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGT 1673
Query 2356 TCGCGCCGGAAACAAAGATCTTATCGGTCACGCTGAAACAAACATCCGTGAACAGTTACG 2415
||||| ||||||| || || | | |||| ||| |||| | ||| || | |||||
Sbjct 1674 ACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACG 1733
Query 2416 CGCTCAAGGTGTCATGTAAAGACCTTTGATTTTATCGTCTTCACTTTTAAGGAGTT---- 2471
|| |||| || |||||| | | | | || | || || | |
Sbjct 1734 TGCAGAAGGAGTGATGTAATG--------TCTAAAGGTAAAAAACGTTCTGGCGCTCGCC 1785
Query 2472 ATGTAATGAAAAAATCAATTCGCCGCTCTGGTGGCAAATCTAAGGGTGCCCGTCTCTGGT 2531
|| | | | || | || ||||| ||| || || ||||| ||||
Sbjct 1786 CTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGT 1845
Query 2532 ATGTAGGCGGAACACAATACTAATCTTTTATGTGGGACCGCGGTCCCACTCTATTTAAGG 2591
||||||| || ||||| ||| || | ||| | ||| ||| || || |||
Sbjct 1846 ATGTAGGTGGTCAACAATTTTAA--TTGCA---GGGGCTTCGGCCCC---TTACTTGAGG 1897
Query 2592 ATACAAAAATGTCTAACGTTCAAACATCTGCGGACCGTGTACCTCATGACTTATCTCACC 2651
||| || |||||||| ||||||| || || ||| | || |||||| | || || |
Sbjct 1898 ATA-AATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATC 1956
Query 2652 TTGTCTTTGAGGCTGGTAAAATTGGCCGCCTCAAAACTATCTCTTGGACGCCTGGTGGTG 2711
||| ||| |||||| | ||||| || || | || || || || || | | |
Sbjct 1957 TTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCG 2016
Query 2712 CTGGTGACTCTTTCGAGTGTGATATGGTTGGCGCTATTCGTCTGTCCCCTCTTCGTCGTG 2771
|||| ||||| |||||| || ||||||||| | ||||| || || | |||||||
Sbjct 2017 CTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTG 2076
Query 2772 GCCTCGCTGTTGACTCACGCGTTGATATCTTTCCTTTCTATATCCCACACCGTCATATCT 2831
|||| ||| ||||||| || || || ||| |||| ||| |||| || ||||| | |
Sbjct 2077 GCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTT 2136
Query 2832 ACGGTCAGCAGTGGATTAACTTTATGAAGGATGGCGTTAATGCCTCCCCTCTTCCTCCTG 2891
| ||| | ||||||||||| || ||||||||||| ||||||||| | ||||| || |||
Sbjct 2137 ATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTG 2196
Query 2892 TT-ACA-TGCTCCTCTGGTTGGGACTCTGCTGCTTATCTCGGTACCATTCCGTCTTCTAC 2949
|| ||| |||| | || ||| ||| |||| ||| || || ||| || |||
Sbjct 2197 TTAACACTGCTGGTTATATT--GACCATGCCGCTTTTCTTGGCACGATTAACCCTGATAC 2254
Query 2950 CCTTAAAGTGCCTAAATTCTTACATCAGGGCTATCTGAATATTTATAATAACTACTTCAA 3009
| |||| | ||||| || |||||| ||| ||||||| ||||| ||||| || ||
Sbjct 2255 CAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAA 2314
Query 3010 ACCGCCTTGGTCTGATGACTTAACTTAC----GCTAACCCATCCAATATGCCT--TC-TG 3062
| |||| || |||| || | | ||| ||||||| | ||| || | || |
Sbjct 2315 AGCGCCGTG----GATGCCTGACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAG 2367
Query 3063 AGGATTATAAATGGGGCGTACGTGTCGCTAACCTTAAATCTATCTGGACTGCGCCACTTC 3122
| ||| | | || | ||| | | || ||| || |||||||| || ||||
Sbjct 2368 ATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTC 2427
Query 3123 CACCGGATACTCGTACATCTGAAAACATGACTACTGGTACATCCACTATTGACATTATGG 3182
| || || ||| ||| | ||||| ||| ||| | |||||||||||||||
Sbjct 2428 CTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGG 2487
Query 3183 GCCTTCAAGCCGCATACGCTAAATTACATACGGAACAGGAACGTGATTACTTCATGACCC 3242
| || ||||| || || ||||| || ||||| || || |||||||||||||||||| |
Sbjct 2488 GTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGC 2547
Query 3243 GTTACCGTGACATTATGAAAGAGTTCGGCGGTCATACATCCTATGATGGTGACAATCGTC 3302
|||||| ||| |||| || || ||| | || || ||||| | |||||| ||||
Sbjct 2548 GTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTC 2607
Query 3303 CTCTTCTGCTCATGCGCTCTGAATTTTGGGCATCTGGCTATGACGTAGACGGTACTGACC 3362
|| | || ||||||||||| | | ||||||||||||||||| || || || |||||||
Sbjct 2608 CTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACC 2667
Query 3363 AATCTTCTCTCGGTCAATTCTCTGGTCGCGTTCAGCAGACCTTCAATCACAAAGTCCCAC 3422
|| | || | || || || |||||||| ||||| ||||||| || || || || |
Sbjct 2668 AAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGC 2727
Query 3423 GCTTCTATGTTCCTGAGCATCGC 3445
| |||| ||||||||||||| ||
Sbjct 2728 GTTTCTTTGTTCCTGAGCATGGC 2750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 17728249211300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |