Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq10094 1471 0.0 >seq10094 Length=2757 Score = 1471 bits (1630), Expect = 0.0 Identities = 2009/2783 (72%), Gaps = 54/2783 (2%) Strand=Plus/Plus Query 684 TGGAGGAGTCAACTATGAAGTCTCGACGTGGCTTTACCGTTCAAAGATTAATGAATGCTA 743 |||||| || |||||||| || || | |||||| | |||| | || |||||||| | Sbjct 1 TGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAA 60 Query 744 TGCGTACTGCCCATTCTAAGGGCTGGTATGTCGTATTCGATACTCTTACTCTAGCCGATG 803 |||| || ||| || | || |||| | |||| || || ||||| || | || || | Sbjct 61 TGCGACAGGCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACG 120 Query 804 ACCGCTTAAAGGATTTCTATGATAATCCCAATGCTCTTCGTGACTACTTCCGTGATATTG 863 |||| ||| ||| || |||||||||||||||||| | |||||||| || |||||||||| Sbjct 121 ACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTG 180 Query 864 GTCGTATGGTGCTTACTGCCGAAGGTCGCTCGGTGCATGACTCATCTTCCGACTGCTATC 923 |||||||||| ||| ||||||| |||||| || |||| ||| |||||||||||| Sbjct 181 GTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATC 240 Query 924 AGTATTTTTGTGTGCCAGAGTATGGTACACAGCACGGTCGTCTACATTTCCACGCAGTGC 983 |||||||||||||||| |||||||||||| | || ||||| |||||||| || |||| Sbjct 241 AGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGC 300 Query 984 ATCTTATGCGCACACTTCCTCTGGGTTCTCTGCACCCTAACTTCGGTAAGCTGGTACGCA 1043 | ||||||| ||||||||| ||| | ||||||| || ||| | |||||||| Sbjct 301 ACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCA 360 Query 1044 TCAATCGGCAAATAAATAGCTTGCAAAACACGTGGCCTTATGGTTACTCTATGCCCATCG 1103 || || |||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 361 ATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCG 420 Query 1104 CAGTCCGGTACTCCCAAGACGCATTCTCTCGCGCTGGCTGGCTCTGGCCTGTGGACTCAA 1163 |||| || ||| | || ||||| || || || |||| ||| | |||||||| || | | Sbjct 421 CAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTA 480 Query 1164 AGGGTGAACCCCTTAAAGCTACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATACG 1223 | ||||| || |||||||||||| ||||||||||| || ||||| || |||||||||| Sbjct 481 AAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACG 540 Query 1224 TTAACAAAAAATCAGATATTGACATGGCCGTAAAAGGCCTAGGGAATAAAGAATGGAACA 1283 |||||||||| |||||||| ||| | || | ||||| ||||| |||||||||||||| Sbjct 541 TTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACA 600 Query 1284 ATTCACTCAAAACCAAAATCAACCTCATACCCAAGAAAGTGTTCAGAATACGAATGTCTC 1343 | ||||| |||||||| | || | |||||||| |||||||||| ||||| | Sbjct 601 ACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCC 660 Query 1344 GCAATTTCGGAATGAAACTGTTATCAATGGCTCACCTGTCAGCGGAAACCCTGATGGAAC 1403 |||| ||||| |||||| || | ||||| | | ||||| |||| | | || ||| Sbjct 661 GCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAAC 720 Query 1404 TGACCCAAGTGGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGA 1463 | ||| | |||||||||||| ||| ||||||||| | || |||||||||||||| || | Sbjct 721 TTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAA 780 Query 1464 AAGAGCTCAAATCGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCTG 1523 |||| | | || |||||||| ||| |||| ||||||||||||| ||||||||||| Sbjct 781 GAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTG 840 Query 1524 TGACGACGAATCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAACC 1583 ||||||| |||||||| ||||| |||||| || || || || || | ||||||| Sbjct 841 TGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACC 900 Query 1584 TACAGAGTTTTATCGCTTCAATGACCACGAAATTAACAAGTACGGATATTTCTGATGAAA 1643 | ||||||||||||||||| ||||| ||| |||||| | |||||||||||||||| Sbjct 901 TGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGT 960 Query 1644 CCAAAAACTACGTTGCTTCTGCAGGAATTGCTGTTGCTAACTTACGAATTAAATCGAAGT 1703 | ||||| || ||| | ||||||||| || |||| ||||||||||||||||||| Sbjct 961 CGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGT 1020 Query 1704 GGACTGCTGGTGGAAAATGAGGAAATTCAATCTCAACTTAAAAAACTCGAGGTCGTCTTA 1763 |||||||||| |||||||||| |||||| | || ||| | |||||| ||||| Sbjct 1021 GGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTA 1080 Query 1764 CTTTGCAACCTTTCGCCATCATCTCAACG-TGCTGGCAAAAACTGACGCCCTTGACGAGG 1822 |||||| |||||||||||||| || |||| | ||| ||||||||||||| | || |||| Sbjct 1081 CTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGG 1139 Query 1823 AGAAATACTTAAATATGTTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAACATT 1882 |||| | | |||||| | || | || ||||||||||||| | || || ||||| Sbjct 1140 AGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATT 1199 Query 1883 TCGTGCATGGTAAACAATCAATGCTTGACATACTGAAAGAACGTGGCCTATTATCCACAT 1942 | || ||||||| | | || | ||||||| | ||||| ||||| || |||| | Sbjct 1200 TTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGT 1259 Query 1943 CGTCAACTGACACAAACCAC--AAAGGAAACTGAAATGTCTAAATCAA---AC-GAATCT 1996 | ||| |||||| | ||| || ||||| | | |||| || ||| Sbjct 1260 CCGATGCTG--TTCAACCACTAATAGGTAA--GAAAT-CATGAGTCAAGTTACTGAACAA 1314 Query 1997 GCTGTAGCCTTTCAAACTGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGTTCTT 2056 | ||| || || || ||| | || ||||| || || ||||| || ||| | ||| | Sbjct 1315 TCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTG 1374 Query 2057 GACTTGACAGAGGACGATTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTACCGAC 2116 || || || || || ||||| || || | || | || || ||||||||||| ||| Sbjct 1375 GATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGAC 1434 Query 2117 CGTTCACGCGCTCGCCG-TGCTATCGAGGCTTGCGTATATGGAACACTGGACTTTGTCGG 2175 || || || ||||| || ||| | ||||||||||| ||||| || ||||||||||| || Sbjct 1435 CGCTCTCGTGCTCGTCGCTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGG 1493 Query 2176 GTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGTTCA 2235 || |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 1494 ATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCA 1553 Query 2236 TCCCGTTAACATCCAAACCGCCTGTCTCATCATGGAAGGTGCTGAGTTTACCGAAAACAT 2295 |||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| |||||||| Sbjct 1554 TCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACAT 1613 Query 2296 CGTCAATGGTGTTGAACGCCCCGTTAAAGCCTCTGAACTGTTCGCCTTCACTCTTCTTGT 2355 | ||||| || || || || ||||||||| ||||| ||||||| || || | | ||| Sbjct 1614 TATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGT 1673 Query 2356 TCGCGCCGGAAACAAAGATCTTATCGGTCACGCTGAAACAAACATCCGTGAACAGTTACG 2415 ||||| ||||||| || || | | |||| ||| |||| | ||| || | ||||| Sbjct 1674 ACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACG 1733 Query 2416 CGCTCAAGGTGTCATGTAAAGACCTTTGATTTTATCGTCTTCACTTTTAAGGAGTT---- 2471 || |||| || |||||| | | | | || | || || | | Sbjct 1734 TGCAGAAGGAGTGATGTAATG--------TCTAAAGGTAAAAAACGTTCTGGCGCTCGCC 1785 Query 2472 ATGTAATGAAAAAATCAATTCGCCGCTCTGGTGGCAAATCTAAGGGTGCCCGTCTCTGGT 2531 || | | | || | || ||||| ||| || || ||||| |||| Sbjct 1786 CTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGT 1845 Query 2532 ATGTAGGCGGAACACAATACTAATCTTTTATGTGGGACCGCGGTCCCACTCTATTTAAGG 2591 ||||||| || ||||| ||| || | ||| | ||| ||| || || ||| Sbjct 1846 ATGTAGGTGGTCAACAATTTTAA--TTGCA---GGGGCTTCGGCCCC---TTACTTGAGG 1897 Query 2592 ATACAAAAATGTCTAACGTTCAAACATCTGCGGACCGTGTACCTCATGACTTATCTCACC 2651 ||| || |||||||| ||||||| || || ||| | || |||||| | || || | Sbjct 1898 ATA-AATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATC 1956 Query 2652 TTGTCTTTGAGGCTGGTAAAATTGGCCGCCTCAAAACTATCTCTTGGACGCCTGGTGGTG 2711 ||| ||| |||||| | ||||| || || | || || || || || | | | Sbjct 1957 TTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCG 2016 Query 2712 CTGGTGACTCTTTCGAGTGTGATATGGTTGGCGCTATTCGTCTGTCCCCTCTTCGTCGTG 2771 |||| ||||| |||||| || ||||||||| | ||||| || || | ||||||| Sbjct 2017 CTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTG 2076 Query 2772 GCCTCGCTGTTGACTCACGCGTTGATATCTTTCCTTTCTATATCCCACACCGTCATATCT 2831 |||| ||| ||||||| || || || ||| |||| ||| |||| || ||||| | | Sbjct 2077 GCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTT 2136 Query 2832 ACGGTCAGCAGTGGATTAACTTTATGAAGGATGGCGTTAATGCCTCCCCTCTTCCTCCTG 2891 | ||| | ||||||||||| || ||||||||||| ||||||||| | ||||| || ||| Sbjct 2137 ATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTG 2196 Query 2892 TT-ACA-TGCTCCTCTGGTTGGGACTCTGCTGCTTATCTCGGTACCATTCCGTCTTCTAC 2949 || ||| |||| | || ||| ||| |||| ||| || || ||| || ||| Sbjct 2197 TTAACACTGCTGGTTATATT--GACCATGCCGCTTTTCTTGGCACGATTAACCCTGATAC 2254 Query 2950 CCTTAAAGTGCCTAAATTCTTACATCAGGGCTATCTGAATATTTATAATAACTACTTCAA 3009 | |||| | ||||| || |||||| ||| ||||||| ||||| ||||| || || Sbjct 2255 CAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAA 2314 Query 3010 ACCGCCTTGGTCTGATGACTTAACTTAC----GCTAACCCATCCAATATGCCT--TC-TG 3062 | |||| || |||| || | | ||| ||||||| | ||| || | || | Sbjct 2315 AGCGCCGTG----GATGCCTGACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAG 2367 Query 3063 AGGATTATAAATGGGGCGTACGTGTCGCTAACCTTAAATCTATCTGGACTGCGCCACTTC 3122 | ||| | | || | ||| | | || ||| || |||||||| || |||| Sbjct 2368 ATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTC 2427 Query 3123 CACCGGATACTCGTACATCTGAAAACATGACTACTGGTACATCCACTATTGACATTATGG 3182 | || || ||| ||| | ||||| ||| ||| | ||||||||||||||| Sbjct 2428 CTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGG 2487 Query 3183 GCCTTCAAGCCGCATACGCTAAATTACATACGGAACAGGAACGTGATTACTTCATGACCC 3242 | || ||||| || || ||||| || ||||| || || |||||||||||||||||| | Sbjct 2488 GTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGC 2547 Query 3243 GTTACCGTGACATTATGAAAGAGTTCGGCGGTCATACATCCTATGATGGTGACAATCGTC 3302 |||||| ||| |||| || || ||| | || || ||||| | |||||| |||| Sbjct 2548 GTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTC 2607 Query 3303 CTCTTCTGCTCATGCGCTCTGAATTTTGGGCATCTGGCTATGACGTAGACGGTACTGACC 3362 || | || ||||||||||| | | ||||||||||||||||| || || || ||||||| Sbjct 2608 CTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACC 2667 Query 3363 AATCTTCTCTCGGTCAATTCTCTGGTCGCGTTCAGCAGACCTTCAATCACAAAGTCCCAC 3422 || | || | || || || |||||||| ||||| ||||||| || || || || | Sbjct 2668 AAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGC 2727 Query 3423 GCTTCTATGTTCCTGAGCATCGC 3445 | |||| ||||||||||||| || Sbjct 2728 GTTTCTTTGTTCCTGAGCATGGC 2750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17728249211300