Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq10094 1620 0.0 >seq10094 Length=2757 Score = 1620 bits (1796), Expect = 0.0 Identities = 2031/2769 (73%), Gaps = 84/2769 (3%) Strand=Plus/Plus Query 686 GAGGAATCCACCATGAAATCACGTAGAGGCTTTACCGTACAAAGACTAATGAATGCTATG 745 |||| ||||| |||||||| |||||||||||| | | || | | |||||||| ||| Sbjct 3 GAGGCCTCCACTATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATG 62 Query 746 CGCACTGCCCACACTGAGGGCTGGTACGTTGTATTCGATACTCTTACTCTCGCCGATGAC 805 || || || |||| || |||| | || || || ||||| || | || || ||| Sbjct 63 CGACAGGCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGAC 122 Query 806 CGCCTTAAGGATTTCTATGATAATCCCAATGCTCTCCGTGACTATTTCCGTGATATTGGT 865 || | ||| || |||||||||||||||||| | ||||||||||| |||||||||||| Sbjct 123 CGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGT 182 Query 866 CGTATGGTTCTCACTGCCGAGGGTCGTTCTGTCCATGATTCATCTTCGGACTGCTATCAG 925 ||||||||||| ||||||||||||| | |||||||| | |||||||||||| Sbjct 183 CGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAG 242 Query 926 TATTTTTGTGTGCCTGAGTATGGCACCCAGC--ACGGCCGTTTACATTTTCACGCAGTGC 983 ||||||||||||||||||||||| | |||| | |||||| | ||||| || || |||| Sbjct 243 TATTTTTGTGTGCCTGAGTATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGC 300 Query 984 ACCTTATGCGCACACTTCCTCTGGGTTCTATCGACCCTAACTTTGGCAAGCTGGTGCGTA 1043 || ||||||| ||||||||| ||| | |||||||| ||||| | ||| || | Sbjct 301 ACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCA 360 Query 1044 CTAATCGGCAAATAAATAGCTTGCAAAATACATGGCCCTATGGTTACTCTATGCCCATCG 1103 | || || ||||||||||||||||||| ||||| ||||||||| ||||||||||| Sbjct 361 ATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCG 420 Query 1104 CGGTCCGGTACTCCCAAGACGCATTTTCGCGCGCTGGCTGGCTCTGGCCCGTTGATACAA 1163 | || || ||| | || ||||| ||||| || |||| ||| | ||||| |||||| | | Sbjct 421 CAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTA 480 Query 1164 AGGGCGAACCTCTTAAAGCTACCTCGTATATGGCTGTCGGCTTCTACGTCGCTAAATACG 1223 | || || || |||||||||||| ||||||||||| || ||||| || |||||||||| Sbjct 481 AAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACG 540 Query 1224 TTAACAAAAAATCAGATATTGACATGGCCTCTAAAGGTCTAGGGAATAAAGAATGGAACA 1283 |||||||||| |||||||| ||| | || ||||||||||||| |||||||||||||| Sbjct 541 TTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACA 600 Query 1284 ATTCACTCAAAACCAAAATCAACCTGCTGCCCAAGAAAATTTTTCGCATCAGGATGTCTC 1343 | ||||| |||||||| | || || |||||||| | || | ||||| ||| | Sbjct 601 ACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCC 660 Query 1344 GCAACTTCGGAATGAAGCTGCACACAATGAGTCACCTCTCAGCGGAAACTCTAATCCAAC 1403 |||||||||| ||||| ||| |||||||| | || || |||| ||||||||| Sbjct 661 GCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAAC 720 Query 1404 TGACCCAAGTGGGCTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGA 1463 | ||| | |||| ||||||| ||| ||||||||| | || |||||||||||||| || | Sbjct 721 TTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAA 780 Query 1464 AAGAGCTACGATTGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCTG 1523 |||| | |||||||||||| ||| |||| ||||||||||||| ||||||||||| Sbjct 781 GAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTG 840 Query 1524 TGACGACCAATCTGCTAAAATTCATGCGCAATTTGACCCGTCAA----ATCGGAGTGTCC 1579 ||||||| |||||||| ||||| |||||| || || | || || || || ||| Sbjct 841 TGACGACAAATCTGCTCAAATTTATGCGCGCTTCGA----TAAAAATGATTGGCGTATCC 896 Query 1580 AACCTGCAGAGTTTTATCGCTTCAATGACAACGAAATTAACAAGTATGGATATTTCTGAT 1639 ||||||||||||||||||||||| ||||| ||| |||||| | ||||||||||||| Sbjct 897 AACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGAT 956 Query 1640 GAAACCAAAAACTACGTTGATACTGCAGGAATTACTGCTACTCACTTACGAATTAAATCG 1699 || | ||||| || |||||| |||||||||||| || || ||||||||||||||| Sbjct 957 GAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCG 1016 Query 1700 AAGTGGACTGCTGGTGGAAAATGAAGAAATTCAATCTGAACTTAAAAAATTCGAGAAGCT 1759 |||||||||||||| ||||||||| |||||| | || ||| | |||||||||| Sbjct 1017 AAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCT 1076 Query 1760 CTTACTTCGCCACCTTTCGCCATCACCTGAACG-TACTGGCAAAGACTGACGCTCTCGAC 1818 ||||||| || |||||||||||||| || |||| | ||| |||| |||||||| | || Sbjct 1077 CTTACTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGAT 1135 Query 1819 GAGGAAAAATACCTAAATATGCTAGGTGCTCTCCTCAAGGACTGGTTCCGTTACGAAGAA 1878 ||||| || | || |||||||| || | || ||||||||||||| | || || | Sbjct 1136 GAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCA 1195 Query 1879 CATTTCGTACATGGTAAACAATCAATGCTTGACTTATTAAATGAACGTGGACTATTATC- 1937 ||||| || ||||||| | | || | ||||| | ||||| || |||||| || |||| Sbjct 1196 CATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCT 1255 Query 1938 ----CACA---TCAACAACCAACCCAAAAGGAAATACAAAATGA---ACTCTAACGAATC 1987 | | | |||||| | || ||| || | | |||| | || ||| Sbjct 1256 GAGTCCGATGCTGTTCAACCA--CTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACA 1313 Query 1988 TGCTGTTGCCTTCGCTACTGCTCTCGCATCTATCAAGCTCATTCAGGCTTCATCTGTGCT 2047 | || ||| || ||| | || ||||| ||||||||||||||||| | || | Sbjct 1314 ATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTT 1373 Query 2048 GGACCTGACCGAAGACGACTTCGATTTCTTAACCCGTGACCGTGTATGGATTGCCACTGA 2107 ||| | |||||||| || |||||||| | || || || || |||||||| ||||| Sbjct 1374 GGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGA 1433 Query 2108 CCGCTCCCGTGCTCGCCGCGCTATTGAGGCCTGCGTATATGGTACATTGGACTTTGTCGG 2167 |||||| |||||||| ||| ||||||| ||||| |||||||| |||||||||| || Sbjct 1434 CCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGG 1493 Query 2168 ATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCA 2227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1494 ATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCA 1553 Query 2228 TCCCGTTAACATCCAGACAGCATGTCTTATTATGGAAGGCGCCGAGTTCACCGAAAATAT 2287 |||||| ||||| || || || ||||| || ||||||||||| || || || ||||| || Sbjct 1554 TCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACAT 1613 Query 2288 TATCAATGGTATTGACCAGCCAGTTAAGGCCGCTGAACTATTCGCTTTTACCCTGCGTGT 2347 ||| ||||| | || | || ||||| ||||||||| | ||||| |||||| ||||||| Sbjct 1614 TATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGT 1673 Query 2348 ACGCGCCGGAAACACTGACCATGTTACACATGCAGAAACTAACGTACGTGAACAATTACG 2407 |||||| |||||||||||| | |||| | |||||| ||||| ||| || ||||||| Sbjct 1674 ACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACG 1733 Query 2408 TGCTCAAGGAGTAATGTAATGGCTAAA---------------GGCTCTCG---TCGGCGT 2449 ||| ||||||| |||||||| ||||| ||| |||| | | ||| Sbjct 1734 TGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGT 1793 Query 2450 TC---GCCGTCCCG-----CT----------CTAAAGGTGCTCGCCTCTGGTATGTTGGC 2491 | ||||| || || |||||| ||||| || |||||||| || Sbjct 1794 CCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGT 1853 Query 2492 GGCACACAATTCTAATCTTCTAGGGGCTTCGGCCCCTCTATTTAAGGATATAAAATGTCT 2551 || |||||| ||| || |||||||||||||||| || || |||||| | |||||| Sbjct 1854 GGTCAACAATTTTAA--TTGCAGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCT 1910 Query 2552 AACGTTCAAACTTCCGCTGACCGCATTCCTAACGACCTTTCTCACCTCGTCTTCGAGGCT 2611 || |||||||| ||| || || || || | |||||||| || || | |||| ||| Sbjct 1911 AATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCT 1970 Query 2612 GGTAAAATCGGCCGTTTAAAAACTATCTCCTGGACTCCAGTTGTCGCTGGCGACTCATTT 2671 ||| | || || ||| | | || || || ||||| ||| ||||||||||||| || Sbjct 1971 GGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTC 2030 Query 2672 GAAACTGAGATGGTAGGCGCTATTCGCCTTTCTCCACTCCGTCGCGGCCTTGCCGTCGAC 2731 || | || || |||||| | || ||||||||| | ||||| |||||||| | ||| Sbjct 2031 GAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGAC 2090 Query 2732 TCTCGCGTGGATATCTTCTCTTTCTATATTCCGCATCGTCATATCTATGGTCAAGAATTC 2791 ||| || || || || |||| ||| | || |||||||| | |||||| || | | Sbjct 2091 TCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGG 2150 Query 2792 ATTGAATTCATGAAAGCTGGCGTTAATGCCACTCCTCTCGCACCTGTTACTACTGCCTCT 2851 ||| | |||||||| | ||| |||||||||||||||||| | |||||| |||| || Sbjct 2151 ATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTG---CT 2207 Query 2852 GGCT---GGGATGCTTCTGCCTATCTTGGCACTATTCCATCCTCAAACC-TCAAGGTTCC 2907 || | || | | || | ||||||||| ||| | ||| | ||| || | || Sbjct 2208 GGTTATATTGACCATGCCGCTTTTCTTGGCACGATT-AACCCTGATACCAATAAAATCCC 2266 Query 2908 TAAATTCTTACATCAAGGATACCTTAATATTTACAACAACTACTTTAAGCCACCGTGGGA 2967 ||| || ||| || || | ||||| || |||||||| ||||| | |||| ||| Sbjct 2267 TAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGT-GGA 2325 Query 2968 TG-CTGACCTTACATACGCTAACCCATCTAACATGCCTGAACAGGATTA---TAAATGGG 3023 || |||||| ||| | ||||||| |||| || | | || ||| | | | | Sbjct 2326 TGCCTGACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAGATGATGCTCGTTATG 2382 Query 3024 GCGTTCG-TGTCGCTAACTTAAAATCTATCTGGACCGCCCCCTTACCTCCTAACTCTAAA 3082 | | || || || | || |||| | || ||||| || || | |||||| | || | Sbjct 2383 GTTTCCGTTGCTGCCATCTCAAAAAC-ATTTGGACTGCTCCGCTTCCTCCTGAGACTGAG 2441 Query 3083 ACATCAGAGACTATGACCACTGGCGCTACGTCTATTGATATTATGGGCCTGCAAGCTGCT 3142 || ||||| ||| | || |||||||| |||||||| |||||||||||| Sbjct 2442 CTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCT 2501 Query 3143 TATGCTAAATTGCACACCCAACAAGAACGTGACTACTTCATGACTCGCTATCGCGATATT 3202 |||||||| ||||| || | ||||||||||| ||||||||| || || | ||| || Sbjct 2502 TATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTT 2561 Query 3203 ATGAAAGACTTCGGAGGTCACACCTCCTATGACGGTGATAACCGTCCTCTGCTGCTTATG 3262 || || |||||| | ||||| ||||||| ||| ||||||||| | || | ||| Sbjct 2562 ATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATG 2621 Query 3263 CGCTCTGAATTTTGGGCCTCTGGCTATGACGTCGACGGTACTGACCAATCCTCTTTAGGT 3322 |||||| | | ||||| ||||||||||| || || || ||||||||| | || ||||| Sbjct 2622 CGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGC 2681 Query 3323 CAGTTCTCCGGTCGCGTCCAACAAACATTCAATCACAAAGTACCTCGCTTCTATGTACCT 3382 ||||| || ||||| || ||||| || | || || || || || |||| ||| ||| Sbjct 2682 CAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCT 2741 Query 3383 GAACACGGC 3391 || || ||| Sbjct 2742 GAGCATGGC 2750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17437150207650