Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq10094 1676 0.0 >seq10094 Length=2757 Score = 1676 bits (1858), Expect = 0.0 Identities = 2051/2778 (74%), Gaps = 98/2778 (4%) Strand=Plus/Plus Query 692 GAGGAATCCACCATGAAATCCCGCCGTGGCTTTACCGTTCAGAGATTGATGAATGCTATG 751 |||| ||||| |||||||| || | |||||| | ||||| | ||||||||||| ||| Sbjct 3 GAGGCCTCCACTATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATG 62 Query 752 CGTACTGCCCACACTGATGGCTGGTATGTTGTATTCGATACTCTCACCTTAGCTGATGAT 811 || || || ||||||| |||| | | || || || |||||||| || ||||| || Sbjct 63 CGACAGGCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGAC 122 Query 812 CGTATTA-AGGACTTCTATGCTAACCCCAATGCTCTTCGTGACTATTTCCGTGATATTGG 870 || |||| ||| || |||| ||| ||||||||| | ||||||||||| ||||||||||| Sbjct 123 CG-ATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGG 181 Query 871 CCGTATGGTTCTCACTGCCGAGGGTCGTTCGGTCCATGATTCATCTTCGGACTGCTATCA 930 ||||||||||| ||||||||||||| || |||||||| | ||||||||||| Sbjct 182 TCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCA 241 Query 931 GTACTTTTGTGTGCCTGAGTATGGCACCCAGC--ATGGCCGTTTACACTTTCACGCAGTG 988 ||| |||||||||||||||||||| | |||| |||||||| | || || || || ||| Sbjct 242 GTATTTTTGTGTGCCTGAGTATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTG 299 Query 989 CATCTTATGCGCACACTTCCTTTGGGTTCTCTCGACCCTAACTTTGGTAAGCTGGTGCGT 1048 || ||||||| ||||||||| ||| | |||||||| |||||| | ||| || Sbjct 300 CACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGC 359 Query 1049 ACTAATCGGCAAATAAATAGCTTGCAAAACACATGGCCTTATGGTTACTCTATGCCCATC 1108 | | || || |||||||||||||||| || ||||||||||||||| |||||||||| Sbjct 360 AATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATC 419 Query 1109 GCAGTCCGGTATTCTCAGGATGCTTTCTCTCGCGCTGGATGGCTCTGGCCTGTCGATACA 1168 ||||| || || | ||||| ||||| || || |||| ||| | |||||||| ||| | Sbjct 420 GCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCT 479 Query 1169 AAGGGTGAACCCCTTAAATCCACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATAC 1228 || ||||| || |||||| | ||| ||||||||||| || ||||| || ||||||||| Sbjct 480 AAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATAC 539 Query 1229 GTTAATAAAAAATCTGATGTTGACATAGCCGCAAAAGGCTTAGGGAATCAAAAATGGAAC 1288 ||||| ||||| || ||| | ||| | || || ||||| |||| | || |||||||| Sbjct 540 GTTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAAC 599 Query 1289 GCTACATTAAAAACGCAGATGGCTCTTTTACCAAAGAAACTATTTCGAATTCGAATGAGC 1348 || ||||||| || || | || | || ||||| || || |||| |||||||| Sbjct 600 AACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGC 659 Query 1349 CGCAACTTCGGGATGAAACTACTCCCAATGACGACGCTGACCGCGGAGTGTTTAATCCAA 1408 |||||||||||||||||| | ||| ||||||| | ||| || ||||||| ||||||||| Sbjct 660 CGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAA 719 Query 1409 CTGACCCAAGTGGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAG 1468 || ||| | |||||||||||| ||| ||||||||| | || |||||||||||||| || Sbjct 720 CTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAA 779 Query 1469 AAAGAGCTACGATTGAGGCTGGCAAAGCAATCTGTAGCCGACGTTTTGGAGGCGCAACCT 1528 | |||| | |||||||||||| ||| |||||||||||||||||| |||||||||| Sbjct 780 AGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCT 839 Query 1529 GTGACGACCAATCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAGC 1588 |||||||| |||||||| ||||| |||||| || || || || || | |||| | Sbjct 840 GTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAAC 899 Query 1589 CTACAGAGTTTTATCGCTTCAATGACGCAGAAATTAGCAAATACGGATATTTCTGATGAA 1648 || ||||||||||||||||| ||||||||||| ||| || | |||||||||||||||| Sbjct 900 CTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAG 959 Query 1649 ACTAAAAACTACGTTACTAATGCAGGAATTGCTGTTGCTGACTTACGACTTAAATCGAAG 1708 | ||||| || || ||| ||||||||| || |||| |||||| ||||||||||| Sbjct 960 TCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAG 1019 Query 1709 TGGACTGCTGGTGGAAAATGAAGAACTTCAATCTCAACTTAAAGAACTCGAGGGCGTCTT 1768 ||||||||||| ||||||||| || ||| | || ||| | |||||| |||| Sbjct 1020 TGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTT 1079 Query 1769 ACTTCGCAACCTTTCGCCATCATCTCAACG-TGGTAGCAAAGACTGACGCGCTTGATGAA 1827 |||| || |||||||||||||| || |||| | | |||| ||||||||| | ||||| Sbjct 1080 ACTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAG 1138 Query 1828 GAAAAATGGCTCAATATGATGGGCGCTCTTCTTAAGGACTGGTTCCGCTATGAACAACAT 1887 || || ||||| |||||| | ||| | | | ||||||||||| | ||||| |||| Sbjct 1139 GAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACAT 1198 Query 1888 TTCGTACATGGCAAAGAATCAATGCTTGACATTCTAAATGAACGTGGCCTATTATCCACC 1947 || || ||||| | ||| || | |||||||| |||| || ||||| || ||| | Sbjct 1199 TTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTAT---CT 1255 Query 1948 TTGCCAAATG--GCTTAAC--TTACAAAGGAATCAAAAATGA---AAGCAAATGAGAACG 2000 | | ||| | | ||| || | | || || |||| ||| | ||| | Sbjct 1256 GAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAAT 1315 Query 2001 CAGTAGCCTTTCAAACCGCTATTGCCTCCATCAAACTTATTCAGGCATCTTCTGTTCTTG 2060 | ||| || || |||||| | ||||| || || || |||||||| ||| | ||| | | Sbjct 1316 CCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGG 1375 Query 2061 ACCTGACTGAGGACGATTTCGAATTCTTAACTCGTGACCGTGTATGGATTGCAACTGACC 2120 | | || || || |||||||| || | || || || || |||||||| ||||||| Sbjct 1376 ATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACC 1435 Query 2121 GCTCCCGTGCTCGCCGCGCTATTGAGGCTTGCGTTTATGGAACTCTGGACTTTGTGGGAT 2180 |||| |||||||| ||| ||||||||||||||||||| || ||||||||||| |||| Sbjct 1436 GCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGAT 1495 Query 2181 ACCCTCGCTTTCCTGCTCCTATTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATC 2240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1496 ACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATC 1555 Query 2241 CCGTTAACATTCAAACGGCATGTCTTATTATGGAAGGCGCTGAATTCACCGAAAACATCA 2300 |||| |||||||||||||| ||||| || ||||||||||||||||| || |||||||| | Sbjct 1556 CCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTA 1615 Query 2301 TTAATGGTGTCGATGCCCCGGTTAAAGCCGCTGAACTCTTCGCGTTTACCTTGCGTGTAC 2360 ||||||| ||||| |||||||||||||||||| | |||||||||||||||||||||| Sbjct 1616 TTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTAC 1675 Query 2361 GCGCCGGAAACACTGAGCTTATTACTTACGCAGAAAACAATGCGCGTGAAAAACTGCGCG 2420 |||| ||||||||||| || ||||| |||||||| | || | |||| ||||| | || | Sbjct 1676 GCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTG 1735 Query 2421 CTCAAGGAGTGATG-GATGTC------TAAAAAATCTATTCGC---CGCTCTGGT----- 2465 | ||||||||||| ||||| ||||||| | | || ||| ||||| Sbjct 1736 CAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCC 1795 Query 2466 ----------------------GGCAAATCTAAAGGTGCTCGCCTCTGGTATGTTGGCGG 2503 ||||| |||||| ||||| || |||||||| || || Sbjct 1796 GCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGG 1855 Query 2504 CACACAATTCTAATCTCTAAGGGGCTTCGGCCCCTCTATTTAAGGATACAAAATGTCTAA 2563 |||||| |||| | |||||||||||||||| || || |||||| | |||||||| Sbjct 1856 TCAACAATTTTAATTGC--AGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAA 1912 Query 2564 CGTACAAACTTCCGCTGAACGTATTCCGCATGACCTCTCACATCTGGTATTCGAAGCTGG 2623 | |||||| ||| || ||||| ||||||||||| || ||||| | ||| ||||| Sbjct 1913 TATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGG 1972 Query 2624 TAAAATCGGACGCCTTAAAACTATCTCCTGGACTCCTGTTGTCGCTGGTGATTCTTACGA 2683 | | || || || |||| || || || ||||| ||| ||||||| || || | ||| Sbjct 1973 TCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGA 2032 Query 2684 AACTGAAATGGTAGGCGCTATTCGTCTTTCTCCTCTCCGTCGTGGTCTGGCTGTCGACTC 2743 | || || |||||| | ||||||||||| | |||||||| || ||| | ||||| Sbjct 2033 GATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTC 2092 Query 2744 TCGCGTCGACGTCTTTACTTTCTATATCCCTCATCGTCATGTCTATGGTCAACAATGGAT 2803 | || ||| | |||||||| ||| ||||||||||||| || |||||| |||| ||||| Sbjct 2093 TACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGAT 2152 Query 2804 TGACTTTATGAAGACTGGCGTTAACGCTACTCCTCTGGCTCCGGTAACTTGTTCCTCTGG 2863 | | || |||||| ||| ||||| || |||||||| ||| ||| | | || | Sbjct 2153 TAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCT---CCCG---ACTGTTAACACT-G 2205 Query 2864 CTGG-------GATTCTGCTGCCTATCTTGGCAC---TATCCCGTCAACTAATTTGAAGG 2913 |||| || ||| || | ||||||||| || ||| || ||| || Sbjct 2206 CTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAAT---AAAA 2262 Query 2914 TTCCTAA--ATTCCTTCATCAATCTTATCTCAATATTTACAACAACTACTTTAAGCCGCC 2971 | ||||| ||| || ||| |||| | ||||| || |||||||| ||||| |||| Sbjct 2263 TCCCTAAGCATTTGTT--TCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCC 2320 Query 2972 GTGGTCTAATGACCTCACCTATGCTAACCCATCTAATATGCCCGCTGAGGAT--TACAAA 3029 |||| ||||| ||| | ||||||| ||||| || | | ||| | | Sbjct 2321 GTGGATGCCTGACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAGATGATGCTCG 2377 Query 3030 TGGGGCGTTC--GTGTCGCTAACTTAAAATCTATCTGGACCGCGCCCCTTCCTCCTGATT 3087 | | ||| || || | || |||| | || ||||| || || ||||||||||| Sbjct 2378 TTATGGTTTCCGTTGCTGCCATCTCAAAAAC-ATTTGGACTGCTCCGCTTCCTCCTGAGA 2436 Query 3088 CATTAAC-TAAGCAGGATATGACTACTGGCGCTACCA---CTATCGATATTATGGGCCTA 3143 | | | | | | | ||||| ||| |||||| |||| || |||||||| || Sbjct 2437 C-TGAGCTTTCTCGCCAAATGACGACT---TCTACCACATCTATTGACATTATGGGTCTG 2492 Query 3144 CAAGCTGCCTATGCTAAACTCCACACTGAACAGGAACGTGACTATTTCATGACTCGCTAC 3203 |||||||| |||||||| | || ||||| || |||||||| || |||||| || ||| Sbjct 2493 CAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTAC 2552 Query 3204 CGCGATATTATGAAAGACTTTGGCGGTCACACCTCCTACGACGGTGATAACCGTCCTCTG 3263 | ||| |||| ||||| ||| | ||||| || |||| ||| ||||||||| | Sbjct 2553 CATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTA 2612 Query 3264 CTCCTGATGCGCTCTGAATTTTGGGCCTCTGGCTATGACGTCGACGGTACTGACCAAACT 3323 || | ||||||||| | | ||||| ||||||||||| || || || ||||||||||| Sbjct 2613 CTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACG 2672 Query 3324 TCATTGGGTCAGTTCTCTGGTCGCGTCCAACAAACCTTTAATCATAAAGTGCCTCGCTTC 3383 || || || ||||| |||||||| || ||||| |||| ||| ||| ||||| || ||| Sbjct 2673 TCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTC 2732 Query 3384 TATGTTCCTGAGCATGGC 3401 | |||||||||||||||| Sbjct 2733 TTTGTTCCTGAGCATGGC 2750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17437150207650