Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24]
31,710 sequences; 316,975,410 total letters
Query= NC_012868.1
Length=6094
Score E
Sequences producing significant alignments: (Bits) Value
seq10094 854 0.0
>seq10094
Length=2757
Score = 854 bits (946), Expect = 0.0
Identities = 1035/1404 (74%), Gaps = 59/1404 (4%)
Strand=Plus/Plus
Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616
|||||||| || ||| ||||| | || || || |||||||| || ||||| || | |
Sbjct 1355 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 1414
Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676
| |||||||||| || |||||| ||||| |||||||| || |||||||| |||||||
Sbjct 1415 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 1474
Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736
| ||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 1475 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 1534
Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796
|||||||||||||||||||||||||||||||||| || || || ||| | ||||||||||
Sbjct 1535 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 1594
Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCT 2856
| || |||| ||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 1595 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 1654
Query 2857 TCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAA 2916
|||||| ||| ||||| | |||||| || || | | | ||| || || ||||
Sbjct 1655 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAA 1714
Query 2917 ATGCTCGTCAGAAATTACGCGCAAATGGACTGA---AATGATATGAAG--AAAGCACGT- 2970
| | ||||| |||||||| ||| | ||| ||| |||| | | ||| ||| ||||
Sbjct 1715 ACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATG-TCTAAAGGTAAAAAACGTT 1773
Query 2971 ----CGTTCTCC-TAGTCGTC------------------------------GTAAAGGTG 2995
|| || || | |||||| ||||||| |
Sbjct 1774 CTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCG 1833
Query 2996 CCCGCCTTTGGTATGTAGGCGGTTCTCAGTTTTAATTATGAGCCCTTCGGGGCTCT--TT 3053
| || |||||||||||||| ||| || |||||||| | |||||| | | ||
Sbjct 1834 CTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTT 1893
Query 3054 AAGGA-AAATTAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTTTC 3112
|||| |||||| |||||||| | |||||| ||| || ||| |||||||||
Sbjct 1894 GAGGATAAATTA--TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTC 1951
Query 3113 TCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTCATGGACTCCT 3170
||||||| ||| | ||| | || |||||||||| | | || ||||| |||||
Sbjct 1952 CCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCG 2009
Query 3171 GTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTTTCTCCTCTG 3230
||||| |||||||| ||||| ||| | || || ||||||||| | ||||||||||| ||
Sbjct 2010 GTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTG 2069
Query 3231 CGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTTCACTTTCTATATTCCGCATCGC 3290
|||||||| | ||||||||||||| || || |||| ||||| ||| | || |||||
Sbjct 2070 CGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGT 2129
Query 3291 CATGTTTATGGTGACCAGTGGATTCAATTTATGCGTGATGGTGTTGATGCCGCACCACTC 3350
|| ||||||||||| ||||||||| | || ||| ||||||||| ||||| | || |||
Sbjct 2130 CACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTC 2189
Query 3351 CCTTCCGTTACTACTACTCAGTATCCGGATGACGCTGGTTATGTTGGTACTATTGTTCCT 3410
|| | |||| ||| || ||| || | || | || | |||| || ||| |||
Sbjct 2190 CCGACTGTTAACACTGCTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCT 2249
Query 3411 AAGAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTAT 3470
| | ||| || |||||| |||| |||| |||| ||||||| ||||| ||||||
Sbjct 2250 GATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTAT 2309
Query 3471 TTCCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAAT----TTAGACCG 3526
|| ||||||||||||||||| ||||| || ||||| ||| ||| ||| | |
Sbjct 2310 TTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCT---AATGAGCTTA-ATCA 2365
Query 3527 TGATGATTCTCGCTATGGATTCCGTTGCTGCCATCTTAAAACTATTTGGTCTGCTCCTCT 3586
|||||| |||| ||||| ||||||||||||||||| |||| |||||| ||||||| ||
Sbjct 2366 AGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCT 2425
Query 3587 TCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTAT 3646
|||||| || ||| |||| || |||||| | | | || || ||||| |||||
Sbjct 2426 TCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTAT 2485
Query 3647 GGGTTTGCAGGCCGCTTATGCGCAGCTTCATACTGAGCAGGAGCGTACTTATTTCATGCA 3706
|||| |||| || |||||||| | | |||||||| || || ||| ||| ||||||||
Sbjct 2486 GGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCA 2545
Query 3707 GCGTTATCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCG 3766
|||||| | ||||||||| || ||||| ||| |||||| ||||| || || |||||
Sbjct 2546 GCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCG 2605
Query 3767 ACCGTTGCTTGTTATGCACACCGATTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGA 3826
|| || ||||| |||| | | || ||||||| || || || || ||||| || || ||
Sbjct 2606 TCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGA 2665
Query 3827 CCAATCTTCCCTCGGACAGTTTTCGGGTCGAGTCCAACAGACGTTTAAACACTCAGTGCC 3886
|||| | || | || |||||||| ||||| || |||||||| | |||||| || |||||
Sbjct 2666 CCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCC 2725
Query 3887 TCGATTCTTCGTGCCGGAGCATGG 3910
|| ||||| || || ||||||||
Sbjct 2726 GCGTTTCTTTGTTCCTGAGCATGG 2749
Score = 178 bits (196), Expect = 5e-41
Identities = 281/398 (71%), Gaps = 6/398 (2%)
Strand=Plus/Plus
Query 1292 GGCTGGTTCTTTGTATTTGATACACTGACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1351
|| ||||| | || ||||| || || || | ||||| ||||| || |||| ||| ||
Sbjct 81 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 140
Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411
|| || ||||||||| | ||||| |||||| | | ||||||| ||||| ||
Sbjct 141 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 200
Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAG 1471
|| ||||| || ||| ||||| || ||||||||||| ||| |||||||||| |||
Sbjct 201 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 260
Query 1472 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529
| || | |||| | ||||||||||||| || | ||||| | ||||||| ||||
Sbjct 261 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 318
Query 1530 CTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1589
|| || || ||||||||||| ||||| |||||| ||| |||||| |||| |
Sbjct 319 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 377
Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1648
| || | | |||||| ||||| | || || || || |||||||| ||
Sbjct 378 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 437
Query 1649 GACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686
||||||| ||| ||| |||||| |||||||||||||
Sbjct 438 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19378684429520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |