Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq11052 1297 0.0 >seq11052 Length=2252 Score = 1297 bits (1438), Expect = 0.0 Identities = 1649/2254 (73%), Gaps = 36/2254 (2%) Strand=Plus/Minus Query 653 AAGGGTGTTAAAGATGAGTGCTCAAAAATCTTGGAGGAGTCAACTATGAAGTCTCGACGT 712 || ||| |||| |||||||| |||| | | |||||| || |||||||| || || | Sbjct 2235 AAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGA 2176 Query 713 GGCTTTACCGTTCAAAGATTAATGAATGCTATGCGTACTGCCCATTCTAAGGGCTGGTAT 772 |||||| | |||| | || |||||||| ||||| || ||| || | || |||| | Sbjct 2175 GGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCTGATGGTTGGTTT 2116 Query 773 GTCGTATTCGATACTCTTACTCTAGCCGATGACCGCTTAAAGGATTTCTATGATAATCCC 832 |||| || || ||||| || | || || ||||| ||| ||| || |||||||||||| Sbjct 2115 ATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTATGATAATCCC 2056 Query 833 AATGCTCTTCGTGACTACTTCCGTGATATTGGTCGTATGGTGCTTACTGCCGAAGGTCGC 892 |||||| | |||||||| || |||||||||||||||||||| ||| ||||||| |||||| Sbjct 2055 AATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGC 1996 Query 893 TCGGTGCATGACTCATCTTCCGACTGCTATCAGTATTTTTGTGTGCCAGAGTATGGTACA 952 || |||| ||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 1995 AAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACA 1936 Query 953 CAGCACGGTCGTCTACATTTCCACGCAGTGCATCTTATGCGCACACTTCCTCTGGGTTCT 1012 | || ||||| |||||||| || ||||| ||||||| ||||||||| ||| Sbjct 1935 GCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTAGC 1876 Query 1013 CTGCACCCTAACTTCGGTAAGCTGGTACGCATCAATCGGCAAATAAATAGCTTGCAAAAC 1072 | ||||||| || ||| | |||||||| || || |||||||||||||||| Sbjct 1875 GTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAAT 1816 Query 1073 ACGTGGCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTACTCCCAAGACGCATTCTCT 1132 |||||||||||||||||| ||||||||||||||| || ||| | || ||||| || || Sbjct 1815 ACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCA 1756 Query 1133 CGCGCTGGCTGGCTCTGGCCTGTGGACTCAAAGGGTGAACCCCTTAAAGCTACCTCGTAT 1192 || |||| ||| | |||||||| || | || ||||| || |||||||||||| ||| Sbjct 1755 CGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTAT 1696 Query 1193 ATGGCTGTAGGCTTCTACGTTGCTAAATACGTTAACAAAAAATCAGATATTGACATGGCC 1252 |||||||| || ||||| || |||||||||||||||||||| |||||||| ||| | || Sbjct 1695 ATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATATGGACCTTGCT 1636 Query 1253 GTAAAAGGCCTAGGGAATAAAGAATGGAACAATTCACTCAAAACCAAAATCAACCTCATA 1312 | ||||| ||||| ||||||||||||||| ||||| |||||||| | || | Sbjct 1635 GCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACTT 1576 Query 1313 CCCAAGAAAGTGTTCAGAATACGAATGTCTCGCAATTTCGGAATGAAACTGTTATCAATG 1372 |||||||| |||||||||| ||||| ||||| ||||| |||||| || | ||||| Sbjct 1575 CCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATG 1516 Query 1373 GCTCACCTGTCAGCGGAAACCCTGATGGAACTGACCCAAGTGGGTTACGACGTGACCCCG 1432 | | ||||| |||| | | || |||| ||| | |||||||||||| ||| ||| Sbjct 1515 ACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCG 1456 Query 1433 TTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTCAAATCGAGGCTGGCAAAGAAA 1492 |||||| | || |||||||||||||| || | |||| | | || |||||||| ||| Sbjct 1455 TTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTT 1396 Query 1493 TCTGTCGCCGACGTTTTGGAGGCGCAACCTGTGACGACGAATCTGCTAAAATTCATGCGC 1552 |||| ||||||||||||| |||||||||||||||||| |||||||| ||||| |||||| Sbjct 1395 ACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGC 1336 Query 1553 AATTTGACCCGAACAATCGGAGCGTCCAACCTACAGAGTTTTATCGCTTCAATGACCACG 1612 || || || || || | |||||||| ||||||||||||||||| ||||| | Sbjct 1335 GCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCTTCCATGACGCAG 1276 Query 1613 AAATTAACAAGTACGGATATTTCTGATGAAACCAAAAACTACGTTGCTTCTGCAGGAATT 1672 || |||||| | |||||||||||||||| | ||||| || ||| | ||||||||| Sbjct 1275 AAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATT 1216 Query 1673 GCTGTTGCTAACTTACGAATTAAATCGAAGTGGACTGCTGGTGGAAAATGAGGAAATTCA 1732 || |||| ||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 1215 ACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCG 1156 Query 1733 ATCTCAACTTAAAAAACTCGAGGTCGTCTTACTTTGCAACCTTTCGCCATCATCTCAACG 1792 | || ||| | |||||| ||||||||||| |||||||||||||| || |||| Sbjct 1155 ACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACT-AACG 1097 Query 1793 -TGCTGGCAAAAACTGACGCCCTTGACGAGGAGAAATACTTAAATATGTTAGGTGCTCTC 1851 | ||| ||||||||||||| | || |||||||| | | |||||| | || | || Sbjct 1096 ATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTC 1037 Query 1852 CTCAAGGACTGGTTCCGGTACGAAGAACATTTCGTGCATGGTAAACAATCAATGCTTGAC 1911 ||||||||||||| | || || |||||| || ||||||| | | || | ||||| Sbjct 1036 GTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGAC 977 Query 1912 ATACTGAAAGAACGTGGCCTATTATCCACATCGTCAACTGACACAAACCAC--AAAGGAA 1969 || | ||||| ||||| || |||| || ||| |||||| | ||| | Sbjct 976 ATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTG--TTCAACCACTAATAGGTA 919 Query 1970 ACTGAAATGTCTAAATCAA---AC-GAATCTGCTGTAGCCTTTCAAACTGCTATCGCTTC 2025 | ||||| | | |||| || ||| | ||| || || || ||| | || || Sbjct 918 A--GAAAT-CATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTC 862 Query 2026 TATCAAACTTATTCAAGCATCTTCTGTTCTTGACTTGACAGAGGACGATTTTGACTTCTT 2085 ||| || || ||||| || ||| | ||| | || || || || || ||||| || || | Sbjct 861 TATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCT 802 Query 2086 AACTCGCGACCGTGTCTGGATTGCTACCGACCGTTCACGCGCTCGCCG-TGCTATCGAGG 2144 || | || || ||||||||||| ||||| || || ||||| || ||| | |||| Sbjct 801 GACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGC-GTTGAGG 743 Query 2145 CTTGCGTATATGGAACACTGGACTTTGTCGGGTATCCTCGCTTTCCTGCTCCTGTTGAGT 2204 ||||||| ||||| || ||||||||||| || || ||||||||||||||||||||||||| Sbjct 742 CTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGT 683 Query 2205 TTATTTCTGCCGTCATTGCTTATTACGTTCATCCCGTTAACATCCAAACCGCCTGTCTCA 2264 ||||| ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||| Sbjct 682 TTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCA 623 Query 2265 TCATGGAAGGTGCTGAGTTTACCGAAAACATCGTCAATGGTGTTGAACGCCCCGTTAAAG 2324 |||||||||| ||||| ||||| |||||||| | ||||| || || || || ||||||| Sbjct 622 TCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAG 563 Query 2325 CCTCTGAACTGTTCGCCTTCACTCTTCTTGTTCGCGCCGGAAACAAAGATCTTATCGGTC 2384 || ||||| ||||||| || || | | ||| ||||| ||||||| || || | | Sbjct 562 CCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTG 503 Query 2385 ACGCTGAAACAAACATCCGTGAACAGTTACGCGCTCAAGGTGTCATGTAAAGACCTTTGA 2444 |||| ||| |||| | ||| || | ||||| || |||| || |||||| | Sbjct 502 ACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATG-------- 451 Query 2445 TTTTATCGTCTTCACTTTTAAGGAGTT----ATGTAATGAAAAAATCAATTCGCCGCTCT 2500 | | | || | || || | | || | | | || | || Sbjct 450 TCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACT 391 Query 2501 GGTGGCAAATCTAAGGGTGCCCGTCTCTGGTATGTAGGCGGAACACAATACTAATCTTTT 2560 ||||| ||| || || ||||| ||||||||||| || ||||| ||| || Sbjct 390 AAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAA--TTGC 333 Query 2561 ATGTGGGACCGCGGTCCCACTCTATTTAAGGATACAAAAATGTCTAACGTTCAAACATCT 2620 | ||| | ||| ||| || || |||||| || |||||||| ||||||| Sbjct 332 A---GGGGCTTCGGCCCC---TTACTTGAGGATA-AATTATGTCTAATATTCAAACTGGC 280 Query 2621 GCGGACCGTGTACCTCATGACTTATCTCACCTTGTCTTTGAGGCTGGTAAAATTGGCCGC 2680 || || ||| | || |||||| | || || |||| ||| |||||| | ||||| || Sbjct 279 GCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGT 220 Query 2681 CTCAAAACTATCTCTTGGACGCCTGGTGGTGCTGGTGACTCTTTCGAGTGTGATATGGTT 2740 || | || || || || || | | ||||| ||||| |||||| || ||| Sbjct 219 CTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTT 160 Query 2741 GGCGCTATTCGTCTGTCCCCTCTTCGTCGTGGCCTCGCTGTTGACTCACGCGTTGATATC 2800 |||||| | ||||| || || | ||||||||||| ||| ||||||| || || || Sbjct 159 GGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATT 100 Query 2801 TTTCCTTTCTATATCCCACACCGTCATATCTACGGTCAGCAGTGGATTAACTTTATGAAG 2860 ||| |||| ||| |||| || ||||| | || ||| | ||||||||||| || |||||| Sbjct 99 TTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAG 40 Query 2861 GATGGCGTTAATGCCTCCCCTCTTCCTCCTGTTA 2894 ||||| ||||||||| | ||||| || |||||| Sbjct 39 GATGGTGTTAATGCCACTCCTCTCCCGACTGTTA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17729565685690