Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= NC_007856.1
Length=5486
Score E
Sequences producing significant alignments: (Bits) Value
seq11052 1525 0.0
>seq11052
Length=2252
Score = 1525 bits (1690), Expect = 0.0
Identities = 1680/2229 (75%), Gaps = 58/2229 (3%)
Strand=Plus/Minus
Query 659 AAGGGTACTAAAGATGAGTGCTCGAAAATCCTTGAGGAATCCACCATGAAATCCCGCCGT 718
|| |||| ||| |||||||| || | | | || |||| ||||| |||||||| || |
Sbjct 2235 AAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGA 2176
Query 719 GGCTTTACCGTTCAGAGATTGATGAATGCTATGCGTACTGCCCACACTGATGGCTGGTAT 778
|||||| | ||||| | ||||||||||| ||||| || || ||||||| |||| |
Sbjct 2175 GGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCTGATGGTTGGTTT 2116
Query 779 GTTGTATTCGATACTCTCACCTTAGCTGATGATCGTATTA-AGGACTTCTATGCTAACCC 837
| || || || |||||||| || ||||| || || |||| ||| || |||| ||| ||
Sbjct 2115 ATCGTTTTTGACACTCTCACGTTGGCTGACGACCG-ATTAGAGGCGTTTTATGATAATCC 2057
Query 838 CAATGCTCTTCGTGACTATTTCCGTGATATTGGCCGTATGGTTCTCACTGCCGAGGGTCG 897
||||||| | ||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 2056 CAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCG 1997
Query 898 TTCGGTCCATGATTCATCTTCGGACTGCTATCAGTACTTTTGTGTGCCTGAGTATGGCAC 957
|| |||||||| | |||||||||||||| |||||||||||||||||||| ||
Sbjct 1996 CAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTAC 1937
Query 958 CCAGC--ATGGCCGTTTACACTTTCACGCAGTGCATCTTATGCGCACACTTCCTTTGGGT 1015
||| |||||||| | || || || || ||||| ||||||| ||||||||| |||
Sbjct 1936 --AGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGT 1879
Query 1016 TCTCTCGACCCTAACTTTGGTAAGCTGGTGCGTACTAATCGGCAAATAAATAGCTTGCAA 1075
| |||||||| |||||| | ||| || | | || || ||||||||||||||
Sbjct 1878 AGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAA 1819
Query 1076 AACACATGGCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTATTCTCAGGATGCTTTC 1135
|| || ||||||||||||||| ||||||||||||||| || || | ||||| |||||
Sbjct 1818 AATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTT 1759
Query 1136 TCTCGCGCTGGATGGCTCTGGCCTGTCGATACAAAGGGTGAACCCCTTAAATCCACCTCG 1195
|| || |||| ||| | |||||||| ||| | || ||||| || |||||| | |||
Sbjct 1758 TCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGT 1699
Query 1196 TATATGGCTGTAGGCTTCTACGTTGCTAAATACGTTAATAAAAAATCTGATGTTGACATA 1255
||||||||||| || ||||| || |||||||||||||| ||||| || ||| | ||| |
Sbjct 1698 TATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATATGGACCTT 1639
Query 1256 GCCGCAAAAGGCTTAGGGAATCAAAAATGGAACGCTACATTAAAAACGCAGATGGCTCTT 1315
|| || ||||| |||| | || |||||||| || ||||||| || || | ||
Sbjct 1638 GCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTA 1579
Query 1316 TTACCAAAGAAACTATTTCGAATTCGAATGAGCCGCAACTTCGGGATGAAACTACTCCCA 1375
| || ||||| || || |||| |||||||||||||||||||||||||| | ||| ||
Sbjct 1578 CTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACA 1519
Query 1376 ATGACGACGCTGACCGCGGAGTGTTTAATCCAACTGACCCAAGTGGGTTACGACGTGACC 1435
||||| | ||| || ||||||| ||||||||||| ||| | |||||||||||| |||
Sbjct 1518 ATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACG 1459
Query 1436 CCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTACGATTGAGGCTGGCAAAG 1495
||||||||| | || |||||||||||||| || | |||| | |||||||||||| |||
Sbjct 1458 CCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAA 1399
Query 1496 CAATCTGTAGCCGACGTTTTGGAGGCGCAACCTGTGACGACCAATCTGCTAAAATTCATG 1555
|||||||||||||||||| |||||||||||||||||| |||||||| ||||| |||
Sbjct 1398 GTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATG 1339
Query 1556 CGCAATTTGACCCGAACAATCGGAGCGTCCAGCCTACAGAGTTTTATCGCTTCAATGACG 1615
||| || || || || || | |||| ||| ||||||||||||||||| ||||||
Sbjct 1338 CGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCTTCCATGACG 1279
Query 1616 CAGAAATTAGCAAATACGGATATTTCTGATGAAACTAAAAACTACGTTACTAATGCAGGA 1675
||||| ||| || | |||||||||||||||| | ||||| || || ||| ||||||
Sbjct 1278 CAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGA 1219
Query 1676 ATTGCTGTTGCTGACTTACGACTTAAATCGAAGTGGACTGCTGGTGGAAAATGAAGAACT 1735
||| || |||| |||||| |||||||||||||||||||||| ||||||||| || |
Sbjct 1218 ATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAAT 1159
Query 1736 TCAATCTCAACTTAAAGAACTCGAGGGCGTCTTACTTCGCAACCTTTCGCCATCATCTCA 1795
|| | || ||| | |||||| |||||||| || |||||||||||||| || |
Sbjct 1158 TCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACT-A 1100
Query 1796 ACG-TGGTAGCAAAGACTGACGCGCTTGATGAAGAAAAATGGCTCAATATGATGGGCGCT 1854
||| | | |||| ||||||||| | ||||| || || ||||| |||||| | ||| |
Sbjct 1099 ACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACG 1040
Query 1855 CTTCTTAAGGACTGGTTCCGCTATGAACAACATTTCGTACATGGCAAAGAATCAATGCTT 1914
| | ||||||||||| | ||||| |||||| || ||||| | ||| || | ||
Sbjct 1039 TTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTT 980
Query 1915 GACATTCTAAATGAACGTGGCCTATTATCCACCTTGCCAAATG--GCTTAAC--TTACAA 1970
|||||| |||| || ||||| || ||| | | | ||| | | ||| || |
Sbjct 979 GACATTTTAAAAGAGCGTGGATTACTAT---CTGAGTCCGATGCTGTTCAACCACTAATA 923
Query 1971 AGGAATCAAAAATGA---AAGCAAATGAGAACGCAGTAGCCTTTCAAACCGCTATTGCCT 2027
| || || |||| ||| | ||| | | ||| || || |||||| | ||||
Sbjct 922 GGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCT 863
Query 2028 CCATCAAACTTATTCAGGCATCTTCTGTTCTTGACCTGACTGAGGACGATTTCGAATTCT 2087
| || || || |||||||| ||| | ||| | || | || || || |||||||| ||
Sbjct 862 CTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTC 803
Query 2088 TAACTCGTGACCGTGTATGGATTGCAACTGACCGCTCCCGTGCTCGCCGCGCTATTGAGG 2147
| || || || || |||||||| ||||||||||| |||||||| ||| ||||||
Sbjct 802 TGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGG 743
Query 2148 CTTGCGTTTATGGAACTCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTATTGAGT 2207
||||||||||||| || ||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 742 CTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGT 683
Query 2208 TTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACATTCAAACGGCATGTCTTA 2267
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 682 TTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCA 623
Query 2268 TTATGGAAGGCGCTGAATTCACCGAAAACATCATTAATGGTGTCGATGCCCCGGTTAAAG 2327
| ||||||||||||||||| || |||||||| |||||||| ||||| ||||||||||
Sbjct 622 TCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAG 563
Query 2328 CCGCTGAACTCTTCGCGTTTACCTTGCGTGTACGCGCCGGAAACACTGAGCTTATTACTT 2387
|||||||| | |||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 562 CCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTG 503
Query 2388 ACGCAGAAAACAATGCGCGTGAAAAACTGCGCGCTCAAGGAGTGATG-GATGTC------ 2440
|||||||| | || | |||| ||||| | || || ||||||||||| |||||
Sbjct 502 ACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGG 443
Query 2441 TAAAAAATCTATTCGC---CGCTCTGGT---------------------------GGCAA 2470
||||||| | | || ||| ||||| |||||
Sbjct 442 TAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAA 383
Query 2471 ATCTAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAATTCTAATCTCTAAGGGGCTT 2530
|||||| ||||| || |||||||| || || |||||| |||| | ||||||||
Sbjct 382 GCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGC--AGGGGCTT 325
Query 2531 CGGCCCCTCTATTTAAGGATACAAAATGTCTAACGTACAAACTTCCGCTGAACGTATTCC 2590
|||||||| || || |||||| | |||||||| | |||||| ||| || ||||| ||
Sbjct 324 CGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCC 266
Query 2591 GCATGACCTCTCACATCTGGTATTCGAAGCTGGTAAAATCGGACGCCTTAAAACTATCTC 2650
||||||||| || ||||| | ||| |||||| | || || || |||| || || ||
Sbjct 265 GCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTC 206
Query 2651 CTGGACTCCTGTTGTCGCTGGTGATTCTTACGAAACTGAAATGGTAGGCGCTATTCGTCT 2710
||||| ||| ||||||| || || | ||| | || || |||||| | |||||
Sbjct 205 AACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCT 146
Query 2711 TTCTCCTCTCCGTCGTGGTCTGGCTGTCGACTCTCGCGTCGACGTCTTTACTTTCTATAT 2770
|||||| | |||||||| || ||| | |||||| || ||| | |||||||| ||| |
Sbjct 145 TTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGT 86
Query 2771 CCCTCATCGTCATGTCTATGGTCAACAATGGATTGACTTTATGAAGACTGGCGTTAACGC 2830
|||||||||||| || |||||| |||| |||||| | || |||||| ||| ||||| ||
Sbjct 85 CCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGC 26
Query 2831 TACTCCTCT 2839
||||||||
Sbjct 25 CACTCCTCT 17
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 17438445065445
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