Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq11052 1525 0.0 >seq11052 Length=2252 Score = 1525 bits (1690), Expect = 0.0 Identities = 1680/2229 (75%), Gaps = 58/2229 (3%) Strand=Plus/Minus Query 659 AAGGGTACTAAAGATGAGTGCTCGAAAATCCTTGAGGAATCCACCATGAAATCCCGCCGT 718 || |||| ||| |||||||| || | | | || |||| ||||| |||||||| || | Sbjct 2235 AAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGA 2176 Query 719 GGCTTTACCGTTCAGAGATTGATGAATGCTATGCGTACTGCCCACACTGATGGCTGGTAT 778 |||||| | ||||| | ||||||||||| ||||| || || ||||||| |||| | Sbjct 2175 GGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCTGATGGTTGGTTT 2116 Query 779 GTTGTATTCGATACTCTCACCTTAGCTGATGATCGTATTA-AGGACTTCTATGCTAACCC 837 | || || || |||||||| || ||||| || || |||| ||| || |||| ||| || Sbjct 2115 ATCGTTTTTGACACTCTCACGTTGGCTGACGACCG-ATTAGAGGCGTTTTATGATAATCC 2057 Query 838 CAATGCTCTTCGTGACTATTTCCGTGATATTGGCCGTATGGTTCTCACTGCCGAGGGTCG 897 ||||||| | ||||||||||| ||||||||||| ||||||||||| ||||||||||||| Sbjct 2056 CAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCG 1997 Query 898 TTCGGTCCATGATTCATCTTCGGACTGCTATCAGTACTTTTGTGTGCCTGAGTATGGCAC 957 || |||||||| | |||||||||||||| |||||||||||||||||||| || Sbjct 1996 CAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTAC 1937 Query 958 CCAGC--ATGGCCGTTTACACTTTCACGCAGTGCATCTTATGCGCACACTTCCTTTGGGT 1015 ||| |||||||| | || || || || ||||| ||||||| ||||||||| ||| Sbjct 1936 --AGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGT 1879 Query 1016 TCTCTCGACCCTAACTTTGGTAAGCTGGTGCGTACTAATCGGCAAATAAATAGCTTGCAA 1075 | |||||||| |||||| | ||| || | | || || |||||||||||||| Sbjct 1878 AGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAA 1819 Query 1076 AACACATGGCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTATTCTCAGGATGCTTTC 1135 || || ||||||||||||||| ||||||||||||||| || || | ||||| ||||| Sbjct 1818 AATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTT 1759 Query 1136 TCTCGCGCTGGATGGCTCTGGCCTGTCGATACAAAGGGTGAACCCCTTAAATCCACCTCG 1195 || || |||| ||| | |||||||| ||| | || ||||| || |||||| | ||| Sbjct 1758 TCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGT 1699 Query 1196 TATATGGCTGTAGGCTTCTACGTTGCTAAATACGTTAATAAAAAATCTGATGTTGACATA 1255 ||||||||||| || ||||| || |||||||||||||| ||||| || ||| | ||| | Sbjct 1698 TATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATATGGACCTT 1639 Query 1256 GCCGCAAAAGGCTTAGGGAATCAAAAATGGAACGCTACATTAAAAACGCAGATGGCTCTT 1315 || || ||||| |||| | || |||||||| || ||||||| || || | || Sbjct 1638 GCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTA 1579 Query 1316 TTACCAAAGAAACTATTTCGAATTCGAATGAGCCGCAACTTCGGGATGAAACTACTCCCA 1375 | || ||||| || || |||| |||||||||||||||||||||||||| | ||| || Sbjct 1578 CTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACA 1519 Query 1376 ATGACGACGCTGACCGCGGAGTGTTTAATCCAACTGACCCAAGTGGGTTACGACGTGACC 1435 ||||| | ||| || ||||||| ||||||||||| ||| | |||||||||||| ||| Sbjct 1518 ATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACG 1459 Query 1436 CCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTACGATTGAGGCTGGCAAAG 1495 ||||||||| | || |||||||||||||| || | |||| | |||||||||||| ||| Sbjct 1458 CCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAA 1399 Query 1496 CAATCTGTAGCCGACGTTTTGGAGGCGCAACCTGTGACGACCAATCTGCTAAAATTCATG 1555 |||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||| Sbjct 1398 GTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATG 1339 Query 1556 CGCAATTTGACCCGAACAATCGGAGCGTCCAGCCTACAGAGTTTTATCGCTTCAATGACG 1615 ||| || || || || || | |||| ||| ||||||||||||||||| |||||| Sbjct 1338 CGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCTTCCATGACG 1279 Query 1616 CAGAAATTAGCAAATACGGATATTTCTGATGAAACTAAAAACTACGTTACTAATGCAGGA 1675 ||||| ||| || | |||||||||||||||| | ||||| || || ||| |||||| Sbjct 1278 CAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGA 1219 Query 1676 ATTGCTGTTGCTGACTTACGACTTAAATCGAAGTGGACTGCTGGTGGAAAATGAAGAACT 1735 ||| || |||| |||||| |||||||||||||||||||||| ||||||||| || | Sbjct 1218 ATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAAT 1159 Query 1736 TCAATCTCAACTTAAAGAACTCGAGGGCGTCTTACTTCGCAACCTTTCGCCATCATCTCA 1795 || | || ||| | |||||| |||||||| || |||||||||||||| || | Sbjct 1158 TCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACT-A 1100 Query 1796 ACG-TGGTAGCAAAGACTGACGCGCTTGATGAAGAAAAATGGCTCAATATGATGGGCGCT 1854 ||| | | |||| ||||||||| | ||||| || || ||||| |||||| | ||| | Sbjct 1099 ACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACG 1040 Query 1855 CTTCTTAAGGACTGGTTCCGCTATGAACAACATTTCGTACATGGCAAAGAATCAATGCTT 1914 | | ||||||||||| | ||||| |||||| || ||||| | ||| || | || Sbjct 1039 TTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTT 980 Query 1915 GACATTCTAAATGAACGTGGCCTATTATCCACCTTGCCAAATG--GCTTAAC--TTACAA 1970 |||||| |||| || ||||| || ||| | | | ||| | | ||| || | Sbjct 979 GACATTTTAAAAGAGCGTGGATTACTAT---CTGAGTCCGATGCTGTTCAACCACTAATA 923 Query 1971 AGGAATCAAAAATGA---AAGCAAATGAGAACGCAGTAGCCTTTCAAACCGCTATTGCCT 2027 | || || |||| ||| | ||| | | ||| || || |||||| | |||| Sbjct 922 GGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCT 863 Query 2028 CCATCAAACTTATTCAGGCATCTTCTGTTCTTGACCTGACTGAGGACGATTTCGAATTCT 2087 | || || || |||||||| ||| | ||| | || | || || || |||||||| || Sbjct 862 CTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTC 803 Query 2088 TAACTCGTGACCGTGTATGGATTGCAACTGACCGCTCCCGTGCTCGCCGCGCTATTGAGG 2147 | || || || || |||||||| ||||||||||| |||||||| ||| |||||| Sbjct 802 TGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGG 743 Query 2148 CTTGCGTTTATGGAACTCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTATTGAGT 2207 ||||||||||||| || ||||||||||| |||||||||||||||||||||||| |||||| Sbjct 742 CTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGT 683 Query 2208 TTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACATTCAAACGGCATGTCTTA 2267 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | Sbjct 682 TTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCA 623 Query 2268 TTATGGAAGGCGCTGAATTCACCGAAAACATCATTAATGGTGTCGATGCCCCGGTTAAAG 2327 | ||||||||||||||||| || |||||||| |||||||| ||||| |||||||||| Sbjct 622 TCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAG 563 Query 2328 CCGCTGAACTCTTCGCGTTTACCTTGCGTGTACGCGCCGGAAACACTGAGCTTATTACTT 2387 |||||||| | |||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 562 CCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTG 503 Query 2388 ACGCAGAAAACAATGCGCGTGAAAAACTGCGCGCTCAAGGAGTGATG-GATGTC------ 2440 |||||||| | || | |||| ||||| | || || ||||||||||| ||||| Sbjct 502 ACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGG 443 Query 2441 TAAAAAATCTATTCGC---CGCTCTGGT---------------------------GGCAA 2470 ||||||| | | || ||| ||||| ||||| Sbjct 442 TAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAA 383 Query 2471 ATCTAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAATTCTAATCTCTAAGGGGCTT 2530 |||||| ||||| || |||||||| || || |||||| |||| | |||||||| Sbjct 382 GCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGC--AGGGGCTT 325 Query 2531 CGGCCCCTCTATTTAAGGATACAAAATGTCTAACGTACAAACTTCCGCTGAACGTATTCC 2590 |||||||| || || |||||| | |||||||| | |||||| ||| || ||||| || Sbjct 324 CGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCC 266 Query 2591 GCATGACCTCTCACATCTGGTATTCGAAGCTGGTAAAATCGGACGCCTTAAAACTATCTC 2650 ||||||||| || ||||| | ||| |||||| | || || || |||| || || || Sbjct 265 GCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTC 206 Query 2651 CTGGACTCCTGTTGTCGCTGGTGATTCTTACGAAACTGAAATGGTAGGCGCTATTCGTCT 2710 ||||| ||| ||||||| || || | ||| | || || |||||| | ||||| Sbjct 205 AACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCT 146 Query 2711 TTCTCCTCTCCGTCGTGGTCTGGCTGTCGACTCTCGCGTCGACGTCTTTACTTTCTATAT 2770 |||||| | |||||||| || ||| | |||||| || ||| | |||||||| ||| | Sbjct 145 TTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGT 86 Query 2771 CCCTCATCGTCATGTCTATGGTCAACAATGGATTGACTTTATGAAGACTGGCGTTAACGC 2830 |||||||||||| || |||||| |||| |||||| | || |||||| ||| ||||| || Sbjct 85 CCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGC 26 Query 2831 TACTCCTCT 2839 |||||||| Sbjct 25 CACTCCTCT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17438445065445