Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq2815 466 7e-128 >seq2815 Length=5464 Score = 466 bits (516), Expect = 7e-128 Identities = 574/783 (73%), Gaps = 51/783 (7%) Strand=Plus/Minus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 1816 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 1757 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 1756 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 1697 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1696 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 1637 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 1636 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 1577 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||| Sbjct 1576 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 1517 Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919 |||| ||| ||||| | |||||| || || | | | || || || ||||| Sbjct 1516 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 1457 Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGA--TATGAAG--AAAGCACGT---- 2971 | ||||| |||||||| ||| | ||| ||| || | | | ||| ||| |||| Sbjct 1456 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTG 1397 Query 2972 -CGTTC-TCCTAGTCGT------------------------------CGTAAAGGTGCTC 2999 || || ||| ||||| |||||||| |||| Sbjct 1396 GCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTC 1337 Query 3000 GCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTATGGGCCCTTCGGGGCCTT--TTAAG 3057 | || ||||||||||| ||| || |||||||| || |||||| |||| || || Sbjct 1336 GTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAG 1277 Query 3058 G--AAATTCAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTCTCTC 3115 | ||||| ||||||||| | |||||| ||| || ||| |||||| || | Sbjct 1276 GATAAATT---ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCC 1220 Query 3116 ATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCATGGACTCCTGT 3173 |||||| ||| | ||| | || | |||||||||| | || ||||| ||||| || Sbjct 1219 ATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 1162 Query 3174 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCCCCTCTGCG 3233 |||||||||||| ||||| ||| | || || ||||| ||| | |||||||| || |||| Sbjct 1161 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCG 1102 Query 3234 TCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCACCTTCTACATTCCGCATCGTCA 3293 |||||| | |||||||| |||| || || |||| || || || | || |||||||| Sbjct 1101 TCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCA 1042 Query 3294 TGT 3296 || Sbjct 1041 CGT 1039 Score = 365 bits (404), Expect = 2e-97 Identities = 525/736 (71%), Gaps = 8/736 (1%) Strand=Plus/Minus Query 3379 GACCATGCTGGTTATGTAGGTACTATTGTTCCTG---CAAATAACCGTATTCCTAAGTTT 3435 |||||||| | || | | || || ||| |||| | ||||| || |||||| | Sbjct 778 GACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAA---ATCCCTAAGCAT 722 Query 3436 TTGCATCAGAGCTATCTGAACATTTACAATAACTATTTCCGTGCCCCGTGGATGCCTGAG 3495 ||| |||| | ||| |||| || || || |||||||| || |||||||||||||| Sbjct 721 TTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGAC 662 Query 3496 CGTACCGAGGCCAACCCGTCTAATCTTAATGAGGATGATGCTCGTTATCGCTTCCGTTGC 3555 ||||||||||| ||||| | | |||||| | ||||||||||||||| | ||||||||| Sbjct 661 CGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGC 602 Query 3556 TGCCACCTTAAAAATATTTGGTCTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAGAA 3615 ||||| || ||||| |||||| |||||||||| ||||| || || | | || || Sbjct 601 TGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAA 542 Query 3616 ATGGGTATTGAAAGCAATTCCATTGATATTATGGGTTTGCAAGCCGCTTATGCGCAGCTT 3675 ||| | | | || || ||||| ||||||||| ||||||| |||||||| | | Sbjct 541 ATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTG 482 Query 3676 CACACTGAGCAGGAGCGTACTTACTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTT 3735 || ||||| || || ||| |||||| ||||||||||||| ||||||||| || ||| Sbjct 481 CATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTT 422 Query 3736 GGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGACTTC 3795 || ||| |||||| ||||| || || ||||| || || ||||| |||| | | | || Sbjct 421 GGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTC 362 Query 3796 TGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAATTCTCTGGT 3855 ||||| || || || || ||||| || || |||||| | || | || || || |||||| Sbjct 361 TGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGT 302 Query 3856 CGAGTCCAGCAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTC 3915 || || || ||||| | |||||| || |||||||| ||||| || ||||||||||| Sbjct 301 CGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACT 242 Query 3916 ATGATGACTTTGGCTCTGATTCGCTTCCCGCCTATCAGTCCGTTGGAGCACCATTATCTT 3975 ||| | ||| | || || |||| || ||||||| | ||| || || ||| Sbjct 241 ATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTT 182 Query 3976 GCTGGTAAGTCTCAGTTAACCTATACCGACCTTGCTGGCGACCCGGCTCTGATTGGTAAC 4035 | ||| | || || |||||||| ||||||||||||| | | || ||| ||| Sbjct 181 AACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAAC 122 Query 4036 TTGCCTCCTCGCGAGATTAGTTATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTATTAA 4094 ||||| || || || ||| ||| | ||| | |||||| |||| ||| || || Sbjct 121 TTGCCGCCGCGTGAAATT-TCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAA 63 Query 4095 GATTAAAGTTGCCGAG 4110 | |||| |||| ||| Sbjct 62 GTTTAAGATTGCTGAG 47 Score = 174 bits (192), Expect = 6e-40 Identities = 280/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352 || ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| || Sbjct 3092 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 3033 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 3032 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 2973 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 2972 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 2913 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 2912 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 2855 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 2854 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 2796 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 2795 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 2736 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 2735 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 2698 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 4201 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 4142 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 4141 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 4087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19353294561408