Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_001730.1
Length=6089
Score E
Sequences producing significant alignments: (Bits) Value
seq2815 479 1e-131
>seq2815
Length=5464
Score = 479 bits (530), Expect = 1e-131
Identities = 578/783 (74%), Gaps = 54/783 (7%)
Strand=Plus/Minus
Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618
|||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | ||
Sbjct 1816 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 1757
Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678
|||||||||||||||||||| ||||| |||||||| || |||||||| ||||||||
Sbjct 1756 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 1697
Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 1696 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 1637
Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCG 2798
|||||||||||||||||||||||||||||||| || || || ||| | |||||||||||
Sbjct 1636 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 1577
Query 2799 GAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2858
|| |||| |||||||||||||||||||||||||| |||||||| |||||||| | |||
Sbjct 1576 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 1517
Query 2859 GCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAAT 2918
|||| ||| ||||| | |||||| || || | | | ||| || ||||| ||
Sbjct 1516 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 1457
Query 2919 GCTCGTCAGAAATTACGCGCAAATGG---GTTGAAATG---ATATGAAAAAAGCACGT-- 2970
| ||||| |||||||| ||| | || | || |||| | | | ||||| ||||
Sbjct 1456 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAA--ACGTTC 1399
Query 2971 ---CGTTC-TCCTAGTCGT------------------------------CGTAAAGGTGC 2996
|| || ||| ||||| |||||||| ||
Sbjct 1398 TGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGC 1339
Query 2997 TCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATT-ATGGGCCTTCGGGCCC---CTTA 3052
||| || ||||||||||| ||| || |||||||| ||| |||||| ||| |||
Sbjct 1338 TCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTG 1279
Query 3053 AGGATTATTAATGTCTAATGTACAAACTTCAGCTGAACGTGAAATTGTTGACCTCTCTCA 3112
||||| | | ||||||||| | |||||| || || ||| |||||| || ||
Sbjct 1278 AGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA 1219
Query 3113 TCTT-GCTT--TTGACTGTGGCATGATTGGTCGCTTGAAAACTGTTTCATGGACTCCTGT 3169
|||| |||| ||| ||| | || ||||||||| | | || ||||| ||||| ||
Sbjct 1218 TCTTGGCTTCCTTG-CTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 1162
Query 3170 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCG 3229
|||||||||||| ||||| ||| | || || ||||| ||| | ||||||||||| ||||
Sbjct 1161 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCG 1102
Query 3230 TCGTGGTTTAGCCATTGATTCTAAGGTTGACTTTTTCACTTTCTATATTCCGCATCGTCA 3289
|||||| | || ||||| |||| || ||| |||| ||||| ||| | || ||||||||
Sbjct 1101 TCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCA 1042
Query 3290 TGT 3292
||
Sbjct 1041 CGT 1039
Score = 401 bits (444), Expect = 2e-108
Identities = 510/699 (73%), Gaps = 2/699 (0%)
Strand=Plus/Minus
Query 3379 ATGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTGCATC 3438
|||| | || | |||| || ||| ||| | | ||| || |||||| |||| ||
Sbjct 774 ATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTC 715
Query 3439 AGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGTACTG 3498
|| |||| ||||||| ||||| |||||||| ||||||||||||||||| ||||| |
Sbjct 714 AGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCG 655
Query 3499 AAGCTAATCCTTCAAA-CTTAGATCGTGATGATTCTCGTTATGGATTCCGTTGTTGCCAT 3557
| ||||| ||| | |||| ||| |||||| |||||||||| |||||||| ||||||
Sbjct 654 AGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCAT 596
Query 3558 CTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGC 3617
|| |||| |||||| ||||||| |||||||| || ||| |||| || ||||||
Sbjct 595 CTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACG 536
Query 3618 ATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCACACT 3677
| | | || || ||||| ||||||||| |||| || |||||||| | | || |||
Sbjct 535 ACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACT 476
Query 3678 GAGCAGGAGCGTACTTATTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGGCGGT 3737
|| || || ||| ||| || ||||||||||||| ||||||||| || ||||| |||
Sbjct 475 GACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGT 416
Query 3738 TCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCATACCGATTTTTGGGCT 3797
|||||| ||||| || || ||||| || || ||||| |||| | || | |||||
Sbjct 415 AAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCA 356
Query 3798 TCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAGTTTTCGGGGCGAGTT 3857
|| || || || ||||| || || |||||| | || | || |||||||| || || |||
Sbjct 355 TCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTT 296
Query 3858 CAACAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATG 3917
|||||||| | |||||| || |||||||| ||||| || ||||||||||| ||| |
Sbjct 295 CAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTT 236
Query 3918 ACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGGT 3977
||| | ||| ||||| || ||||||| || ||| ||| || ||| | |
Sbjct 235 ACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCT 176
Query 3978 CGTAATAATTTGACTTATACCGACCTTGCTGGTGACCCGGCTTTGATTGGTAATTTGCCG 4037
| ||||||||||||||| ||||||| ||||| | |||| ||| || ||||||
Sbjct 175 AAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCG 116
Query 4038 CCGCGTGAGATTTCTTATCAGGACCTTTTCCGTGATGGT 4076
|||||||| |||||| |||| |||||||| ||||
Sbjct 115 CCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGT 77
Score = 158 bits (174), Expect = 5e-35
Identities = 280/400 (70%), Gaps = 10/400 (3%)
Strand=Plus/Minus
Query 1292 GGCTGGTTCTTTGTGTTTGACACGTTGACCCTTGCCGATGACCGTTTGCAGGCATTCAAT 1351
|| ||||| | || |||||||| | || | || || ||||| || |||| || ||
Sbjct 3092 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 3033
Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411
|| || ||||||||| | ||||| |||||| | | ||||||| ||||| ||
Sbjct 3032 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 2973
Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1471
|| ||||| || ||| ||||| || ||||||||||| ||| |||||||||| |||
Sbjct 2972 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 2913
Query 1472 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529
| || | |||| | || |||||||||| || | ||||| | ||||||| ||||
Sbjct 2912 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 2855
Query 1530 CTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTAACT 1589
|| || || ||||||||| || ||||| | |||||| ||| |||||| |||| |
Sbjct 2854 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 2796
Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATCAAC 1646
| || | | |||||| ||||| |||| | | || || || ||||| || |
Sbjct 2795 AGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACACGC 2738
Query 1647 ATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGTTGA 1686
| ||||||| ||| || |||||||| |||||||||||
Sbjct 2737 AGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 2698
Score = 87.8 bits (96), Expect = 7e-14
Identities = 241/360 (67%), Gaps = 32/360 (9%)
Strand=Plus/Minus
Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311
||||||||||||| | ||||| ||||| || |||||||||||| ||| | | |||
Sbjct 4581 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 4524
Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369
| || | | |||||||| ||||||| | |||||||| | || | | || |||
Sbjct 4523 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 4467
Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429
| | |||| | ||| || ||| | | | ||||||||| | ||| ||
Sbjct 4466 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 4420
Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487
| ||||| |||| || || ||| || |||||||| || ||||||||
Sbjct 4419 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 4364
Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547
| || || || || |||||||| || | |||||||||||||| |||| ||||||| |||
Sbjct 4363 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 4304
Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604
| || | | || | | ||||| ||||||||| | ||||||||||||||
Sbjct 4303 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 4247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19359691287424
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