Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_007821.1
Length=6068
Score E
Sequences producing significant alignments: (Bits) Value
seq2815 545 9e-152
>seq2815
Length=5464
Score = 545 bits (604), Expect = 9e-152
Identities = 591/782 (76%), Gaps = 46/782 (6%)
Strand=Plus/Minus
Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640
|||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | |
Sbjct 1818 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 1759
Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700
|| |||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||
Sbjct 1758 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 1699
Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760
| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 1639
Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCG 2820
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1638 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 1579
Query 2821 CTGAGTTTACGGAAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAGCTCT 2880
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 1578 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 1519
Query 2881 TCGCGTACACCTTGCGTGTTAAGGCCGGATTCAAAGAAACGGTT-CTGAGCGCTGAAGAG 2939
|||||| ||||||||||| || ||| || || || |||| ||| |||||
Sbjct 1518 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGA-CGCAGAAGAA 1460
Query 2940 AATGCTCGTCAGAAACTTCGTGCA-----AGTGGAGTAATGT---AATATGAAGAAAGCT 2991
|| | ||||| ||| | |||||| |||| ||||||| || | || || | |
Sbjct 1459 AACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTT 1400
Query 2992 C-GTCGTTC-CCCTTCTCGT----------------------AAG--------AAAGGCG 3019
| | || || |||| |||| ||| |||||||
Sbjct 1399 CTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCG 1340
Query 3020 CTCGTCTCTGGTATGTAGGCGGTTCTCAATTTTAATTAACGGGGCTTCGGCCCCT---AT 3076
||||||| ||||||||||| ||| ||||||||||| ||||||||||||||| |
Sbjct 1339 CTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTT 1280
Query 3077 AAGGATTCTTAAATGTCAAACGTGCAAACTTCCGCTGAACGTATTCCTCACGACCTTTCT 3136
||||| | ||||| || | |||||| ||| || ||||| || || ||||||||
Sbjct 1279 GAGGATAAAT-TATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCC 1221
Query 3137 CATCTGGTTTTTGATGCAGGCAAAATTGGTCGTTTAAAGGTTGTTTCTTGGACTCCTGTT 3196
||||| | || ||| || | ||||||||| | | |||| ||||| |||
Sbjct 1220 CATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTT 1161
Query 3197 GTTGCAGGTGATTCTTTTGAGCTTGATATGATTGGCGCTATTCGCCTTTCCCCGCTTCGT 3256
| || || || || || ||| | || |||||||| | || ||||| || | |||
Sbjct 1160 ATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGT 1101
Query 3257 CGTGGCCTTGCTGTTGACTCTCGTGTTGACCTGTTCACGTTTTATGTCCCTCATCGTCAT 3316
|||||||||||| |||||||| ||| ||| | || || ||||||||||||||||||||
Sbjct 1100 CGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC 1041
Query 3317 GT 3318
||
Sbjct 1040 GT 1039
Score = 385 bits (426), Expect = 2e-103
Identities = 514/708 (73%), Gaps = 10/708 (1%)
Strand=Plus/Minus
Query 3449 CCTAAG--TTTCTTCATCAAGGTTACCTGAACATTTACAATAATTACTTTAAAGCTCCGT 3506
|||||| ||| || ||| ||||| |||| || || || || || |||||||| ||||
Sbjct 730 CCTAAGCATTTGTT--TCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGT 673
Query 3507 GGATGGATGACCTGACTTATGCCAACCCGTCTAATATGGAGGGTGAAGATGTTCGTTTTG 3566
||||| ||||| || | || ||||| | | | | || |||| ||||| ||
Sbjct 672 GGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATG 613
Query 3567 GTGTTCGTGCATGTAACTTGAAAACTATTTGGACTGCTCCGCTTCCTCCGGATACTGAAA 3626
|| | ||| || | | |||| ||||||||||||||||||||||| || |||||
Sbjct 612 GTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGC 553
Query 3627 CCTCTCATTCTATGGAGACTGAAACCAACTCCATTGACATTATGGGTTTGCAGGCCGCTT 3686
|||| ||| |||| |||| || ||||||||||||||| |||| || ||||
Sbjct 552 TTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTT 493
Query 3687 ATGCTCAATTACATACTGAGCAGGAGCGTGATTACTTCATGACTCGTTATCGTGATATTG 3746
||||| | || |||||||| || || ||||||||||||||| ||||| | |||| ||
Sbjct 492 ATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTA 433
Query 3747 TTAACGAATTTGGAGGTAGTACTTCTTATGATGCGGATAATCGTCCTTTGCTTGTTATGC 3806
|| ||||||||||| || |||||||| || || || |||||||| ||||| ||||
Sbjct 432 TTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGC 373
Query 3807 ATTCTGAGTTCTGGGCCTCAGGCTATGATGTTGACGGCACCGACCAAAGCTCTCTCGGTC 3866
||| | ||||||| || |||||||||||||| || || ||||||| || | || |
Sbjct 372 GCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCC 313
Query 3867 AGTTCTCCGGTCGTGTCCAGCAGACGTTTAAGCATTCAGTACCGCGATTCTTCTGCCCTG 3926
|||| || |||||||| || ||||| | ||| ||||| || ||||| ||||| ||||
Sbjct 312 AGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTG 253
Query 3927 AGCATGGCACTATGTTCACACTCGCATTGGTCCGCTTCCCGCCGACTC--ATGAAATGGA 3984
|||||||||||||||| || || || | || || || ||||| ||| | ||| ||
Sbjct 252 AGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GA 195
Query 3985 GATGCATTACTTAGTTGGTAAAGAAGATTTGACTTATACTGATTTGGCTTGTGACCCTGC 4044
||| || ||| | | ||||| | |||||||||||| ||| | ||| | |||||||
Sbjct 194 GATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGT 135
Query 4045 TTTG-ATGGCTAACTTGCCTCCTCGTGAGGTTAATATGTCTCAGTTCTTCCATTCTGGAA 4103
|||| ||||| |||||||| || ||||| || |||| | | |||| ||||||
Sbjct 134 TTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTG 76
Query 4104 GTGCTAGTGCTAAGTTTAAGATCGCTGAAGGTCAGTGGTATCGCATGC 4151
| | | ||||||||||| ||||| |||||||| | ||| ||||
Sbjct 75 ATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGATCTCGTATGC 28
Score = 165 bits (182), Expect = 3e-37
Identities = 278/398 (70%), Gaps = 6/398 (2%)
Strand=Plus/Minus
Query 1293 GGCTGGTTTTTCGTATTTGATACGTTGACACTTGCTGATGATCGTTTGCAGGCTTTTAAT 1352
|| |||||| |||| ||||| || | || | ||||| || || || |||| ||| ||
Sbjct 3092 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 3033
Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412
|| || ||||||||| | ||||| ||||| | | ||||||| ||||| ||
Sbjct 3032 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 2973
Query 1413 GAAGGTCGTTCGGTTAAGGATTCCTACAACGATTGCTATCGCTATCTTTGTGTGCCGGAG 1472
|| ||||| || ||| ||||| || ||| ||||||| ||| |||||||||| |||
Sbjct 2972 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 2913
Query 1473 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCATGTTGTGCATATGGTGCGGACTCTTC 1530
| ||| |||| | || |||||||||| |||| ||||| | ||||||| ||||
Sbjct 2912 TATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 2855
Query 1531 CTTTGGGAAGTTACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590
|| || || ||||||||||| ||||| |||||| ||| |||||| |||| |
Sbjct 2854 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 2796
Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTACGCTATCAACAT 1649
| || | | |||||||||||| | || || || || || ||||| ||
Sbjct 2795 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 2736
Query 1650 GATGCTTATTCTCGCAAAGGTTGGTTGTGGCCTGTTGA 1687
|| |||| ||| || ||||||||||||||||||||
Sbjct 2735 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 2698
Score = 156 bits (172), Expect = 2e-34
Identities = 282/407 (69%), Gaps = 18/407 (4%)
Strand=Plus/Minus
Query 5443 AAGGACAAGCAACCCGTGATTACTTGGCTGCGGCCTTCCCTGAGCTCAATGCATGGGAAC 5502
||||| | | || |||||||| | ||||| || || |||||||| ||||| ||||| |
Sbjct 4387 AAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGC 4328
Query 5503 GTGCTGGAGCTGGTGCTTCCGGTGCCGGATTGGAGTCTTCCGGCC---AGAATCAGCAAA 5559
||||||| |||| ||||||| ||| || ||| |||| ||||||| ||
Sbjct 4327 GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCA---AA 4271
Query 5560 AGGAGTTGATGCGTATGCAGCTGGATACTCAGAAGGATATTGCTAAGATGCAAATGCATA 5619
| ||| | | ||||| ||||| | |||||| || ||||| ||||||||| | |
Sbjct 4270 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGA 4211
Query 5620 ATAATTTGCAGATTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAG 5679
| | |||||||||| |||||||| || ||||| ||| |||||||||| || |
Sbjct 4210 CTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 4151
Query 5680 TTTATGCTCAGAATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGT 5739
| ||||| || |||||||||||| | | | || ||||||| || ||||||| ||
Sbjct 4150 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 4091
Query 5740 CTATCCTCGCCAACACTGACCTTAC--GGCTA-AACAGGCTGCCCATGAAATTATGAG-- 5794
|||| | | ||||| | ||| | || | | |||| | || || |||||| |
Sbjct 4090 CTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC---GAGATTATGCGCC 4034
Query 5795 -AATGGCCCTTACTCGTGCTCAGGAGACTGGTCAGCATTTAACTAAT 5840
|||| ||||||| ||||| | |||||||| |||| || |||
Sbjct 4033 AAATG---CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAT 3990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19292525664256
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