Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq383 951 0.0 >seq383 Length=5495 Score = 951 bits (1054), Expect = 0.0 Identities = 1325/1847 (72%), Gaps = 70/1847 (4%) Strand=Plus/Plus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 1750 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 1809 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 1810 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 1869 Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 1870 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 1929 Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCG 2798 |||||||||||||||||||||||||||||||| || || || ||| | ||||||||||| Sbjct 1930 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 1989 Query 2799 GAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2858 || |||| |||||||||||||||||||||||||| |||||||| |||||||| | ||| Sbjct 1990 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 2049 Query 2859 GCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAAT 2918 |||| ||| ||||| | |||||| || || | | | ||| || ||||| || Sbjct 2050 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 2109 Query 2919 GCTCGTCAGAAATTACGCGCAAATGGGTTGA---AATG---ATATGAAAAAAGCACGT-- 2970 | ||||| |||||||| ||| | || ||| |||| | | | ||||| |||| Sbjct 2110 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAA--ACGTTC 2167 Query 2971 ---CGTTCTCC-TAGTCGTC------------------------------GTAAAGGTGC 2996 || || || | |||||| ||||||| || Sbjct 2168 TGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGC 2227 Query 2997 TCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTAT-GGGCCTTCGGGCCC---CTTA 3052 ||| || ||||||||||| ||| || |||||||| ||| |||||| ||| ||| Sbjct 2228 TCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTG 2287 Query 3053 AGGATTATTAATGTCTAATGTACAAACTTCAGCTGAACGTGAAATTGTTGACCTCTCTCA 3112 ||||| | | ||||||||| | |||||| || || ||| |||||| || || Sbjct 2288 AGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA 2347 Query 3113 TCTTG-CTT--TTGACTGTGGCATGATTGGTCGCTTGAAAACTGTTTCATGGACTCCTGT 3169 ||||| ||| ||| ||| | || ||||||||| | | || ||||| ||||| || Sbjct 2348 TCTTGGCTTCCTTG-CTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 2404 Query 3170 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCG 3229 |||||||||||| ||||| ||| | || || ||||| ||| | ||||||||||| |||| Sbjct 2405 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCG 2464 Query 3230 TCGTGGTTTAGCCATTGATTCTAAGGTTGACTTTTTCACTTTCTATATTCCGCATCGTCA 3289 |||||| | || ||||| |||| || ||| |||| ||||| ||| | || |||||||| Sbjct 2465 TCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCA 2524 Query 3290 TGTTTATGGTGATCAGTGGATTCAATTTATGCGTGATGGTGTTGATGCTTCGCCGCTTCC 3349 ||||||||||| ||||||||| | || ||| ||||||||| |||| | || || || Sbjct 2525 CGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCC 2584 Query 3350 TTCCGTTACTACTACTAAGTATCCGGATGATGCTGGTTATGTTGGTACTATTGTTCCTAA 3409 | |||| |||||| ||| || |||| | || | |||| || ||| ||| | Sbjct 2585 GACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGA 2644 Query 3410 GAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTT 3469 | ||| || |||||| |||| |||| |||| ||||||| ||||| |||||||| Sbjct 2645 TACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTT 2704 Query 3470 CCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCCT-TCAAACTTAGATCGTGATG 3528 ||||||||||||||||| ||||| || ||||| ||| | |||| ||| |||| Sbjct 2705 TAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTA-ATCAAGATG 2763 Query 3529 ATTCTCGTTATGGATTCCGTTGTTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTC 3588 || |||||||||| |||||||| |||||||| |||| |||||| ||||||| ||||||| Sbjct 2764 ATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTC 2823 Query 3589 CGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTT 3648 | || ||| |||| || |||||| | | | || || ||||| ||||||||| Sbjct 2824 CTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTC 2883 Query 3649 TGCAGGCCGCTTATGCGCAGCTTCACACTGAGCAGGAGCGTACTTATTTTATGCAGCGTT 3708 |||| || |||||||| | | || ||||| || || ||| ||| || |||||||||| Sbjct 2884 TGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTT 2943 Query 3709 ACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGT 3768 ||| ||||||||| || ||||| ||| |||||| ||||| || || ||||| || | Sbjct 2944 ACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTT 3003 Query 3769 TGCTTGTTATGCATACCGATTTTTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAAT 3828 | ||||| |||| | || | ||||| || || || || ||||| || || |||||| Sbjct 3004 TACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAA 3063 Query 3829 CTTCCCTTGGACAGTTTTCGGGGCGAGTTCAACAGACGTTTAAACACTCAGTGCCGCGAT 3888 | || | || |||||||| || || ||||||||||| | |||||| || |||||||| | Sbjct 3064 CGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTT 3123 Query 3889 TCTTCGTGCCTGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCA 3948 |||| || ||||||||||| ||| | ||| | ||| ||||| || ||||||| Sbjct 3124 TCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTG 3183 Query 3949 GTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCTG 4008 || ||| ||| || ||| | | | ||||||||||||||| |||||| Sbjct 3184 CGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTG 3243 Query 4009 GTGACCCGGCTTTGATTGGTAATTTGCCGCCGCGTGAGATTTCTTATCAGGACCTTTTCC 4068 | ||||| | |||| ||| || |||||||||||||| |||||| |||| |||||| Sbjct 3244 GCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCC 3303 Query 4069 GTGATGGTCGCCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATC 4128 || |||| || | ||| ||||| |||| ||| | ||||||||| | | Sbjct 3304 GTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGC 3363 Query 4129 CGGATTATGTTAACTAC-AAGTATCAGTTACTTGAGGGTTTCCCGTTCCTTGATGATGCG 4187 | |||||| || | ||||| | ||||| || ||||| ||| || | || || Sbjct 3364 CTTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCG 3422 Query 4188 CCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATGACTAT 4247 | || ||||||| | |||| || | || ||| ||| |||| ||| Sbjct 3423 C---------CTTCTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATGATTAT 3470 Query 4248 AATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTT 4307 | ||||||||||| |||||| | |||||||||| ||||| | | |||||| Sbjct 3471 GACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTG 3530 Query 4308 AATGTTTATCGCCATATTCCTACTGTTCGTGATTCTATTATGACCTC 4354 | ||||||||| || | || || ||| ||||| || ||||| || Sbjct 3531 ACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTC 3577 Score = 158 bits (174), Expect = 5e-35 Identities = 280/400 (70%), Gaps = 10/400 (3%) Strand=Plus/Plus Query 1292 GGCTGGTTCTTTGTGTTTGACACGTTGACCCTTGCCGATGACCGTTTGCAGGCATTCAAT 1351 || ||||| | || |||||||| | || | || || ||||| || |||| || || Sbjct 474 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 533 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 534 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 593 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 594 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 653 Query 1472 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | || |||||||||| || | ||||| | ||||||| |||| Sbjct 654 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 711 Query 1530 CTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||| || ||||| | |||||| ||| |||||| |||| | Sbjct 712 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 770 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATCAAC 1646 | || | | |||||| ||||| |||| | | || || || ||||| || | Sbjct 771 AGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACACGC 828 Query 1647 ATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGTTGA 1686 | ||||||| ||| || |||||||| ||||||||||| Sbjct 829 AGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 868 Score = 87.8 bits (96), Expect = 7e-14 Identities = 241/360 (67%), Gaps = 32/360 (9%) Strand=Plus/Plus Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311 ||||||||||||| | ||||| ||||| || |||||||||||| ||| | | ||| Sbjct 4371 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 4428 Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369 | || | | |||||||| ||||||| | |||||||| | || | | || ||| Sbjct 4429 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 4485 Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429 | | |||| | ||| || ||| | | | ||||||||| | ||| || Sbjct 4486 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 4532 Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487 | ||||| |||| || || ||| || |||||||| || |||||||| Sbjct 4533 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 4588 Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547 | || || || || |||||||| || | |||||||||||||| |||| ||||||| ||| Sbjct 4589 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 4648 Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604 | || | | || | | ||||| ||||||||| | |||||||||||||| Sbjct 4649 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 4705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19369205586520