Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq1527 883 0.0 >seq1527 Length=4762 Score = 883 bits (978), Expect = 0.0 Identities = 1308/1849 (71%), Gaps = 71/1849 (4%) Strand=Plus/Minus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 3882 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 3823 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 3822 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 3763 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3762 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 3703 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 3702 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 3643 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||| Sbjct 3642 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 3583 Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919 |||| ||| ||||| | |||||| || || | | | || || || ||||| Sbjct 3582 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 3523 Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGATATG--AAG--AAAGCACGT---- 2971 | ||||| |||||||| ||| | ||| ||| || || | ||| ||| |||| Sbjct 3522 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTG 3463 Query 2972 -CGTTCTCC-TAGTCGTC------------------------------GTAAAGGTGCTC 2999 || || || | |||||| ||||||| |||| Sbjct 3462 GCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTC 3403 Query 3000 GCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTATGGGCCCTTCGGGGCCTT--TTAAG 3057 | || ||||||||||| ||| || |||||||| || |||||| |||| || || Sbjct 3402 GTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAG 3343 Query 3058 GA--AATTCAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTCTCTC 3115 || |||| ||||||||| | |||||| ||| || ||| |||||| || | Sbjct 3342 GATAAATT---ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCC 3286 Query 3116 ATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCATGGACTCCTGT 3173 |||||| ||| | ||| | || | |||||||||| | || ||||| ||||| || Sbjct 3285 ATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 3228 Query 3174 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCCCCTCTGCG 3233 |||||||||||| ||||| ||| | || || ||||| ||| | |||||||| || |||| Sbjct 3227 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCG 3168 Query 3234 TCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCACCTTCTACATTCCGCATCGTCA 3293 |||||| | |||||||| |||| || || |||| || || || | || |||||||| Sbjct 3167 TCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCA 3108 Query 3294 TGTTTATGGCGACCAGTGGATTCAGTTTATGCGTGATGGTGTTAATGCTCAGCCTCTGCC 3353 |||||||| || ||||||||| |||| ||| |||||||||||||| ||||| || Sbjct 3107 CGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCC 3048 Query 3354 TTCTGTTACTTGCAATCGCTATCCGGACCATGCTGGTTATGTAGGTACTATTGTTCCTG- 3412 |||||| | | | ||| |||||||| | || | | || || ||| |||| Sbjct 3047 GACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGA 2988 Query 3413 --CAAATAACCGTATTCCTAAGTTTTTGCATCAGAGCTATCTGAACATTTACAATAACTA 3470 | ||||| || |||||| |||| |||| | ||| |||| || || || ||||| Sbjct 2987 TACCAATAAA---ATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTA 2931 Query 3471 TTTCCGTGCCCCGTGGATGCCTGAGCGTACCGAGGCCAACCCGTCTAATCTTAATGAGGA 3530 ||| || |||||||||||||| ||||||||||| ||||| | | |||||| | || Sbjct 2930 TTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGA 2871 Query 3531 TGATGCTCGTTATCGCTTCCGTTGCTGCCACCTTAAAAATATTTGGTCTGCTCCGCTGCC 3590 ||||||||||||| | |||||||||||||| || ||||| |||||| |||||||||| || Sbjct 2870 TGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCC 2811 Query 3591 TCCGGAAACCAAATTGGCTGAAGAAATGGGTATTGAAAGCAATTCCATTGATATTATGGG 3650 ||| || || | | || ||||| | | | || || ||||| |||||||| Sbjct 2810 TCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGG 2751 Query 3651 TTTGCAAGCCGCTTATGCGCAGCTTCACACTGAGCAGGAGCGTACTTACTTTATGCAGCG 3710 | ||||||| |||||||| | | || ||||| || || ||| |||||| |||||||| Sbjct 2750 TCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCG 2691 Query 3711 TTACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACC 3770 ||||| ||||||||| || ||||| ||| |||||| ||||| || || ||||| || Sbjct 2690 TTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCC 2631 Query 3771 GTTGCTTGTTATGCACACCGACTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGACCA 3830 || ||||| |||| | | | ||||||| || || || || ||||| || || ||||| Sbjct 2630 TTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCA 2571 Query 3831 ATCTTCCCTTGGACAATTCTCTGGTCGAGTCCAGCAGACGTTTAAACACTCAGTGCCGCG 3890 | | || | || || || |||||||| || || ||||| | |||||| || |||||||| Sbjct 2570 AACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCG 2511 Query 3891 ATTCTTCGTGCCTGAGCATGGTGTCATGATGACTTTGGCTCTGATTCGCTTCCCGCCTAT 3950 ||||| || ||||||||||| ||| | ||| | || || |||| || ||||||| Sbjct 2510 TTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTAC 2451 Query 3951 CAGTCCGTTGGAGCACCATTATCTTGCTGGTAAGTCTCAGTTAACCTATACCGACCTTGC 4010 | ||| || || ||| | ||| | || || |||||||| |||| Sbjct 2450 TGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGC 2391 Query 4011 TGGCGACCCGGCTCTGATTGGTAACTTGCCTCCTCGCGAGATTAGTTATCGA-GATCTGT 4069 ||||||||| | | || ||| |||||||| || || || ||| ||| | ||| | | Sbjct 2390 TGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATT-TCTATGAAGGATGTTT 2332 Query 4070 TCCGTGATGGTCGTTCTGGTATTAAGATTAAAGTTGCCGAGTCTATTTGGTATCGTACTC 4129 ||||| |||| ||| || ||| |||| |||| ||| | ||||||||| | Sbjct 2331 TCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATG 2272 Query 4130 ATCCTGATTACGTTAACTTTAAGTATCATGATTTGCATGGATTCCCGTTCCTTGATGATG 4189 ||| || ||| | ||||| | | | || ||||| ||| || | || Sbjct 2271 CGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAAC 2212 Query 4190 CGCCTGGTACATCTACTGGTGATAATCTTCAGGAAGCTATCCTTGTTCGTCATCAGGACT 4249 ||| || |||||| || | || ||| | ||| |||| || || || | Sbjct 2211 CGC---------CTTCTGGTG---ATTTGCAAGAACGCGTACTTATTCGCCACCATGATT 2164 Query 4250 ATGATGCTTGCTTCCAGTCTCAGCAGTTGCTACAGTGGAACAAACAGGCTCGCTATAACG 4309 |||| || |||||||| |||||| | |||||||| | |||| | | ||| | Sbjct 2163 ATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATG 2104 Query 4310 TTAGTGTTTATCGCCATATGCCTACTGTACGTGATTCCATTATGACCTC 4358 | | ||||||||| || |||| || || ||||| || ||||| || Sbjct 2103 TGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTC 2055 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 881 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 822 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 821 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19362175517292