Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq1527 1180 0.0 >seq1527 Length=4762 Score = 1180 bits (1308), Expect = 0.0 Identities = 1793/2526 (71%), Gaps = 66/2526 (3%) Strand=Plus/Minus Query 1160 TCAAAGGGTGAACCCCTTAAAGCTACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAA 1219 || || ||||| || |||||||||||| ||||||||||| || ||||| || |||||| Sbjct 4762 TCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAA 4703 Query 1220 TACGTTAACAAAAAATCAGATATTGACATGGCCGTAAAAGGCCTAGGGAATAAAGAATGG 1279 |||||||||||||| |||||||| ||| | || | ||||| ||||| |||||||||| Sbjct 4702 TACGTTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGG 4643 Query 1280 AACAATTCACTCAAAACCAAAATCAACCTCATACCCAAGAAAGTGTTCAGAATACGAATG 1339 ||||| ||||| |||||||| | || | |||||||| |||||||||| ||||| Sbjct 4642 AACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATG 4583 Query 1340 TCTCGCAATTTCGGAATGAAACTGTTATCAATGGCTCACCTGTCAGCGGAAACCCTGATG 1399 ||||| ||||| |||||| || | ||||| | | ||||| |||| | | || Sbjct 4582 AGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATC 4523 Query 1400 GAACTGACCCAAGTGGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCC 1459 |||| ||| | |||||||||||| ||| ||||||||| | || |||||||||||||| Sbjct 4522 CAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCA 4463 Query 1460 AAGAAAGAGCTCAAATCGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAA 1519 || | |||| | | || |||||||| ||| |||| ||||||||||||| ||||||| Sbjct 4462 AAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAA 4403 Query 1520 CCTGTGACGACGAATCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCC 1579 ||||||||||| |||||||| ||||| |||||| || || || || || | ||| Sbjct 4402 CCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCC 4343 Query 1580 AACCTACAGAGTTTTATCGCTTCAATGACCACGAAATTAACAAGTACGGATATTTCTGAT 1639 ||||| ||||||||||||||||| ||||| ||| |||||| | |||||||||||||| Sbjct 4342 AACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGAT 4283 Query 1640 GAAACCAAAAACTACGTTGCTTCTGCAGGAATTGCTGTTGCTAACTTACGAATTAAATCG 1699 || | ||||| || ||| | ||||||||| || |||| ||||||||||||||| Sbjct 4282 GAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCG 4223 Query 1700 AAGTGGACTGCTGGTGGAAAATGAGGAAATTCAATCTCAACTTAAAAAACTCGAGGTCGT 1759 |||||||||||||| |||||||||| |||||| | || ||| | |||||| | Sbjct 4222 AAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCT 4163 Query 1760 CTTACTTTGCAACCTTTCGCCATCATCTCAACG-TGCTGGCAAAAACTGACGCCCTTGAC 1818 |||||||||| |||||||||||||| || |||| | ||| ||||||||||||| | || Sbjct 4162 CTTACTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGAT 4104 Query 1819 GAGGAGAAATACTTAAATATGTTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAA 1878 |||||||| | | |||||| | || | || ||||||||||||| | || || | Sbjct 4103 GAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCA 4044 Query 1879 CATTTCGTGCATGGTAAACAATCAATGCTTGACATACTGAAAGAACGTGGCCTATTATCC 1938 ||||| || ||||||| | | || | ||||||| | ||||| ||||| || |||| Sbjct 4043 CATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCT 3984 Query 1939 ACATCGTCAACTGACACAAACCAC--AAAGGAAACTGAAATGTCTAAATCAA---AC-GA 1992 || ||| |||||| | ||| || ||||| | | |||| || || Sbjct 3983 GAGTCCGATGCTG--TTCAACCACTAATAGGTAA--GAAAT-CATGAGTCAAGTTACTGA 3929 Query 1993 ATCTGCTGTAGCCTTTCAAACTGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGT 2052 | | ||| || || || ||| | || ||||| || || ||||| || ||| | || Sbjct 3928 ACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGT 3869 Query 2053 TCTTGACTTGACAGAGGACGATTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTAC 2112 | | || || || || || ||||| || || | || | || || ||||||||||| Sbjct 3868 TTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTAC 3809 Query 2113 CGACCGTTCACGCGCTCGCCG-TGCTATCGAGGCTTGCGTATATGGAACACTGGACTTTG 2171 ||||| || || ||||| || ||| | ||||||||||| ||||| || |||||||||| Sbjct 3808 TGACCGCTCTCGTGCTCGTCGCTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTG 3750 Query 2172 TCGGGTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACG 2231 | || || |||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 3749 TAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATG 3690 Query 2232 TTCATCCCGTTAACATCCAAACCGCCTGTCTCATCATGGAAGGTGCTGAGTTTACCGAAA 2291 |||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| |||| Sbjct 3689 TTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAA 3630 Query 2292 ACATCGTCAATGGTGTTGAACGCCCCGTTAAAGCCTCTGAACTGTTCGCCTTCACTCTTC 2351 |||| | ||||| || || || || ||||||||| ||||| ||||||| || || | | Sbjct 3629 ACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGC 3570 Query 2352 TTGTTCGCGCCGGAAACAAAGATCTTATCGGTCACGCTGAAACAAACATCCGTGAACAGT 2411 ||| ||||| ||||||| || || | | |||| ||| |||| | ||| || | | Sbjct 3569 GTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAAT 3510 Query 2412 TACGCGCTCAAGGTGTCATGTAAAGACCTTTGATTTTATCGTCTTCACTTTTAAGGAGTT 2471 |||| || |||| || |||||| | | | | || | || || | | Sbjct 3509 TACGTGCAGAAGGAGTGATGTAATG--------TCTAAAGGTAAAAAACGTTCTGGCGCT 3458 Query 2472 ----ATGTAATGAAAAAATCAATTCGCCGCTCTGGTGGCAAATCTAAGGGTGCCCGTCTC 2527 || | | | || | || ||||| ||| || || ||||| Sbjct 3457 CGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTT 3398 Query 2528 TGGTATGTAGGCGGAACACAATACTAATCTTTTATGTGGGACCGCGGTCCCACTCTATTT 2587 ||||||||||| || ||||| ||| || | ||| | ||| ||| || || Sbjct 3397 TGGTATGTAGGTGGTCAACAATTTTAA--TTGCA---GGGGCTTCGGCCCC---TTACTT 3346 Query 2588 AAGGATACAAAAATGTCTAACGTTCAAACATCTGCGGACCGTGTACCTCATGACTTATCT 2647 |||||| || |||||||| ||||||| || || ||| | || |||||| | || Sbjct 3345 GAGGATA-AATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCC 3287 Query 2648 CACCTTGTCTTTGAGGCTGGTAAAATTGGCCGCCTCAAAACTATCTCTTGGACGCCTGGT 2707 || |||| ||| |||||| | ||||| || || | || || || || || | | Sbjct 3286 CATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTT 3227 Query 2708 GGTGCTGGTGACTCTTTCGAGTGTGATATGGTTGGCGCTATTCGTCTGTCCCCTCTTCGT 2767 ||||| ||||| |||||| || ||||||||| | ||||| || || | ||| Sbjct 3226 ATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGT 3167 Query 2768 CGTGGCCTCGCTGTTGACTCACGCGTTGATATCTTTCCTTTCTATATCCCACACCGTCAT 2827 |||||||| ||| ||||||| || || || ||| |||| ||| |||| || ||||| Sbjct 3166 CGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC 3107 Query 2828 ATCTACGGTCAGCAGTGGATTAACTTTATGAAGGATGGCGTTAATGCCTCCCCTCTTCCT 2887 | || ||| | ||||||||||| || ||||||||||| ||||||||| | ||||| || Sbjct 3106 GTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCG 3047 Query 2888 CCTGTTACATGCTCCTCTGGTT---GGGACTCTGCTGCTTATCTCGGTACCATTCCGTCT 2944 |||||| | | |||||| ||| ||| |||| ||| || || ||| || Sbjct 3046 ACTGTTA---ACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCT 2990 Query 2945 TCTACCCTTAAAGTGCCTAAATTCTTACATCAGGGCTATCTGAATATTTATAATAACTAC 3004 |||| |||| | ||||| || |||||| ||| ||||||| ||||| ||||| Sbjct 2989 GATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTAT 2930 Query 3005 TTCAAACCGCCTTGGTCTGATGACTTAACTTAC----GCTAACCCATCCAATATGCCT-- 3058 || ||| |||| || |||| || | | ||| ||||||| | ||| || | Sbjct 2929 TTTAAAGCGCCGTG----GATGCCTGACCGTACCGAGGCTAACC---CTAATGAGCTTAA 2877 Query 3059 TC-TGAGGATTATAAATGGGGCGTACGTGTCGCTAACCTTAAATCTATCTGGACTGCGCC 3117 || || ||| | | || | ||| | | || ||| || |||||||| || Sbjct 2876 TCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCC 2817 Query 3118 ACTTCCACCGGATACTCGTACATCTGAAAACATGACTACTGGTACATCCACTATTGACAT 3177 ||||| || || ||| ||| | ||||| ||| ||| | |||||||||| Sbjct 2816 GCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACAT 2757 Query 3178 TATGGGCCTTCAAGCCGCATACGCTAAATTACATACGGAACAGGAACGTGATTACTTCAT 3237 |||||| || ||||| || || ||||| || ||||| || || ||||||||||||||||| Sbjct 2756 TATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCAT 2697 Query 3238 GACCCGTTACCGTGACATTATGAAAGAGTTCGGCGGTCATACATCCTATGATGGTGACAA 3297 | ||||||| ||| |||| || || ||| | || || ||||| | |||||| Sbjct 2696 GCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAA 2637 Query 3298 TCGTCCTCTTCTGCTCATGCGCTCTGAATTTTGGGCATCTGGCTATGACGTAGACGGTAC 3357 |||||| | || ||||||||||| | | ||||||||||||||||| || || || || Sbjct 2636 CCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAAC 2577 Query 3358 TGACCAATCTTCTCTCGGTCAATTCTCTGGTCGCGTTCAGCAGACCTTCAATCACAAAGT 3417 ||||||| | || | || || || |||||||| ||||| ||||||| || || || Sbjct 2576 TGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGT 2517 Query 3418 CCCACGCTTCTATGTTCCTGAGCATCGCGTAATTATGACTCTGGCGGTTACTCGCTTTCC 3477 || || |||| ||||||||||||| || || | ||||| ||| || ||| ||||| Sbjct 2516 GCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCC 2457 Query 3478 GCCTACT--CATGAAATGGAAATGCACTATCTTGTAGGTAAAGAAAACTTAACTTATACC 3535 ||||||| | ||| || || || || ||| | ||||| || ||||||||| Sbjct 2456 GCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACC 2399 Query 3536 GATATTGCTTGTGACCCTGCACTG-ATGGCTAACCTGCCACCTCGTGAAGTATCCTTAAA 3594 ||||||||| | ||||||| || ||||| ||| |||| || |||||| | || | || Sbjct 2398 GATATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAA 2340 Query 3595 AGAATTCTTCC--ACTCCTCACCCGATTCTGCTAAATTCAAAATCGCTGAGGGCCAATGG 3652 || | |||| || | | || ||| || || || || |||||||| || ||| Sbjct 2339 GGATGTTTTCCGTTCTGGTGATTCG--TCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGG 2282 Query 3653 TATCGT 3658 |||||| Sbjct 2281 TATCGT 2276 Score = 163 bits (180), Expect = 1e-36 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 5095 ACATCACGCGAAAATACTAAGGATACTGTCTATGCTCAAAATGAAATGCTCGCGTATAAC 5154 || |||||| | ||||| || || || ||||| |||||||| ||||| || ||| | Sbjct 858 ACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAA 799 Query 5155 CAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAG 5214 || || ||||||| | ||||||| ||||| | |||||||| | || |||| || Sbjct 798 CAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAA 739 Query 5215 CAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAACCGCAGGTCAATAT 5274 || || ||| || |||||||| |||||||||||||| |||||||| || ||||| ||| Sbjct 738 CAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTAT 679 Query 5275 TTTACAAATGACCAAATCAAGGAGCTTACGAGAAAAGTTGGTGCTGATATTGA 5327 ||||| |||||||||||||| || | || | || ||| ||||||| |||| Sbjct 678 TTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 626 Score = 154 bits (170), Expect = 5e-34 Identities = 325/482 (67%), Gaps = 17/482 (4%) Strand=Plus/Minus Query 4563 TATGTTTGGCTCTATCGCTGGCGGTATCGCCTCCGCACTTGCCGGAGGCCTTATGGGTAA 4622 ||||||||| |||| ||||||||||| || || || ||||| || ||| ||| ||| Sbjct 1405 TATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAA 1346 Query 4623 ATTATTTGGCGGCGGTCAGTCCGCCGACTCTACCGGAATCCAAGGCAACGTCCTTGCTTC 4682 ||| ||||| |||||||| |||| ||| || || ||||| | || |||||| | Sbjct 1345 ATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTAC 1286 Query 4683 CGACAACAATGTTGTAGGTGCTAATGATGCTGGTATTAAATCTGCTATTCAGGGCTCTAC 4742 ||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1285 CGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAA 1226 Query 4743 TGTCCCTAACTCTCAGGAAGCTGCTCCCT-CTGCTATCTCTGGCATCCTTGCCGACTCTG 4801 ||| |||||| || | || || | ||||| | | | ||||| | || | ||| Sbjct 1225 TGTTCCTAACCCTGATGAGGCCG-TCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTG 1167 Query 4802 G-CAAGCA-----------TGCGCTCTCGTCTCTTACCAATGCTGGTGCAAATAAACTCA 4849 | ||| | | || | | || || ||| | | | |||| | Sbjct 1166 GTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGC 1107 Query 4850 TGGAGGCTGTCGGCCTTTCT---AAGTCTGCCTCTGACAAGGGCAAGGACACAAAAGACT 4906 | || || || ||| | ||||||||| |||| || || ||||| || || | Sbjct 1106 TTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATT 1047 Query 4907 ATCTCGCCGCCGCATTCCCCGAGCTCAACCCATGGGAACGTGCTGGTGCTGGCGCTTCTA 4966 |||| || || ||||| || ||||| || | ||||| ||||||||||||| ||||| Sbjct 1046 ATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCT 987 Query 4967 GTCCAGGCATGCAAGACGCTGGCTTCCAAAATCAGAAGGAGCTAACCAAGATGCAGCTTG 5026 | | || ||| ||||| || || | ||||| || ||||| || || ||||| || | Sbjct 986 CTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGG 927 Query 5027 AC 5028 || Sbjct 926 AC 925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17733487759090