Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq1527 1352 0.0 >seq1527 Length=4762 Score = 1352 bits (1498), Expect = 0.0 Identities = 1958/2734 (72%), Gaps = 100/2734 (4%) Strand=Plus/Minus Query 1163 AAGGGCGAACCTCTTAAAGCTACCTCGTATATGGCTGTCGGCTTCTACGTCGCTAAATAC 1222 || || || || |||||||||||| ||||||||||| || ||||| || ||||||||| Sbjct 4759 AAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATAC 4700 Query 1223 GTTAACAAAAAATCAGATATTGACATGGCCTCTAAAGGTCTAGGGAATAAAGAATGGAAC 1282 ||||||||||| |||||||| ||| | || ||||||||||||| ||||||||||||| Sbjct 4699 GTTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAAC 4640 Query 1283 AATTCACTCAAAACCAAAATCAACCTGCTGCCCAAGAAAATTTTTCGCATCAGGATGTCT 1342 || ||||| |||||||| | || || |||||||| | || | ||||| ||| Sbjct 4639 AACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGC 4580 Query 1343 CGCAACTTCGGAATGAAGCTGCACACAATGAGTCACCTCTCAGCGGAAACTCTAATCCAA 1402 ||||||||||| ||||| ||| |||||||| | || || |||| |||||||| Sbjct 4579 CGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAA 4520 Query 1403 CTGACCCAAGTGGGCTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAG 1462 || ||| | |||| ||||||| ||| ||||||||| | || |||||||||||||| || Sbjct 4519 CTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAA 4460 Query 1463 AAAGAGCTACGATTGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCT 1522 | |||| | |||||||||||| ||| |||| ||||||||||||| |||||||||| Sbjct 4459 AGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCT 4400 Query 1523 GTGACGACCAATCTGCTAAAATTCATGCGCAATTTGACCCGTCAA----ATCGGAGTGTC 1578 |||||||| |||||||| ||||| |||||| || || | || || || || || Sbjct 4399 GTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGA----TAAAAATGATTGGCGTATC 4344 Query 1579 CAACCTGCAGAGTTTTATCGCTTCAATGACAACGAAATTAACAAGTATGGATATTTCTGA 1638 |||||||||||||||||||||||| ||||| ||| |||||| | |||||||||||| Sbjct 4343 CAACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGA 4284 Query 1639 TGAAACCAAAAACTACGTTGATACTGCAGGAATTACTGCTACTCACTTACGAATTAAATC 1698 ||| | ||||| || |||||| |||||||||||| || || |||||||||||||| Sbjct 4283 TGAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATC 4224 Query 1699 GAAGTGGACTGCTGGTGGAAAATGAAGAAATTCAATCTGAACTTAAAAAATTCGAGAAGC 1758 ||||||||||||||| ||||||||| |||||| | || ||| | ||||||||| Sbjct 4223 GAAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGC 4164 Query 1759 TCTTACTTCGCCACCTTTCGCCATCACCTGAACG-TACTGGCAAAGACTGACGCTCTCGA 1817 |||||||| || |||||||||||||| || |||| | ||| |||| |||||||| | || Sbjct 4163 TCTTACTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGA 4105 Query 1818 CGAGGAAAAATACCTAAATATGCTAGGTGCTCTCCTCAAGGACTGGTTCCGTTACGAAGA 1877 ||||| || | || |||||||| || | || ||||||||||||| | || || Sbjct 4104 TGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTC 4045 Query 1878 ACATTTCGTACATGGTAAACAATCAATGCTTGACTTATTAAATGAACGTGGACTATTATC 1937 |||||| || ||||||| | | || | ||||| | ||||| || |||||| || |||| Sbjct 4044 ACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC 3985 Query 1938 -----CACA---TCAACAACCAACCCAAAAGGAAATACAAAATGA---ACTCTAACGAAT 1986 | | | |||||| | || ||| || | | |||| | || ||| Sbjct 3984 TGAGTCCGATGCTGTTCAACCA--CTAATAGGTAAGAAATCATGAGTCAAGTTACTGAAC 3927 Query 1987 CTGCTGTTGCCTTCGCTACTGCTCTCGCATCTATCAAGCTCATTCAGGCTTCATCTGTGC 2046 | || ||| || ||| | || ||||| ||||||||||||||||| | || Sbjct 3926 AATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTT 3867 Query 2047 TGGACCTGACCGAAGACGACTTCGATTTCTTAACCCGTGACCGTGTATGGATTGCCACTG 2106 |||| | |||||||| || |||||||| | || || || || |||||||| |||| Sbjct 3866 TGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTG 3807 Query 2107 ACCGCTCCCGTGCTCGCCGCGCTATTGAGGCCTGCGTATATGGTACATTGGACTTTGTCG 2166 ||||||| |||||||| ||| ||||||| ||||| |||||||| |||||||||| | Sbjct 3806 ACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAG 3747 Query 2167 GATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTC 2226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3746 GATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTC 3687 Query 2227 ATCCCGTTAACATCCAGACAGCATGTCTTATTATGGAAGGCGCCGAGTTCACCGAAAATA 2286 ||||||| ||||| || || || ||||| || ||||||||||| || || || ||||| | Sbjct 3686 ATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACA 3627 Query 2287 TTATCAATGGTATTGACCAGCCAGTTAAGGCCGCTGAACTATTCGCTTTTACCCTGCGTG 2346 |||| ||||| | || | || ||||| ||||||||| | ||||| |||||| |||||| Sbjct 3626 TTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTG 3567 Query 2347 TACGCGCCGGAAACACTGACCATGTTACACATGCAGAAACTAACGTACGTGAACAATTAC 2406 ||||||| |||||||||||| | |||| | |||||| ||||| ||| || |||||| Sbjct 3566 TACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTAC 3507 Query 2407 GTGCTCAAGGAGTAATGTAATGGCTAAA---------------GGCTCTCG---TCGGCG 2448 |||| ||||||| |||||||| ||||| ||| |||| | | || Sbjct 3506 GTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCG 3447 Query 2449 TTC---GCCGTCCCG-----CT----------CTAAAGGTGCTCGCCTCTGGTATGTTGG 2490 | | ||||| || || |||||| ||||| || |||||||| || Sbjct 3446 TCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGG 3387 Query 2491 CGGCACACAATTCTAATCTTCTAGGGGCTTCGGCCCCTCTATTTAAGGATATAAAATGTC 2550 || |||||| ||| || |||||||||||||||| || || |||||| | ||||| Sbjct 3386 TGGTCAACAATTTTAA--TTGCAGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATGTC 3330 Query 2551 TAACGTTCAAACTTCCGCTGACCGCATTCCTAACGACCTTTCTCACCTCGTCTTCGAGGC 2610 ||| |||||||| ||| || || || || | |||||||| || || | |||| || Sbjct 3329 TAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGC 3270 Query 2611 TGGTAAAATCGGCCGTTTAAAAACTATCTCCTGGACTCCAGTTGTCGCTGGCGACTCATT 2670 |||| | || || ||| | | || || || ||||| ||| ||||||||||||| || Sbjct 3269 TGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTT 3210 Query 2671 TGAAACTGAGATGGTAGGCGCTATTCGCCTTTCTCCACTCCGTCGCGGCCTTGCCGTCGA 2730 || | || || |||||| | || ||||||||| | ||||| |||||||| | || Sbjct 3209 CGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGA 3150 Query 2731 CTCTCGCGTGGATATCTTCTCTTTCTATATTCCGCATCGTCATATCTATGGTCAAGAATT 2790 |||| || || || || |||| ||| | || |||||||| | |||||| || | | Sbjct 3149 CTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTG 3090 Query 2791 CATTGAATTCATGAAAGCTGGCGTTAATGCCACTCCTCTCGCACCTGTT---ACTACTGC 2847 ||| | |||||||| | ||| |||||||||||||||||| | ||||| ||||||| Sbjct 3089 GATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGG 3030 Query 2848 CTCTGGCTGGGATGCTTCTGCCTATCTTGGCACTATTCCATCCTCAAACC-TCAAGGTTC 2906 | | || | | || | ||||||||| ||| | ||| | ||| || | | Sbjct 3029 TTAT---ATTGACCATGCCGCTTTTCTTGGCACGATT-AACCCTGATACCAATAAAATCC 2974 Query 2907 CTAAATTCTTACATCAAGGATACCTTAATATTTACAACAACTACTTTAAGCCACCGTGGG 2966 |||| || ||| || || | ||||| || |||||||| ||||| | |||| || Sbjct 2973 CTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGT-GG 2915 Query 2967 ATG-CTGACCTTACATACGCTAACCCATCTAACATGCCTGAACAGGATTA---TAAATGG 3022 ||| |||||| ||| | ||||||| |||| || | | || ||| | | | Sbjct 2914 ATGCCTGACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAGATGATGCTCGTTAT 2858 Query 3023 GGCGTTCG-TGTCGCTAACTTAAAATCTATCTGGACCGCCCCCTTACCTCCTAACTCTAA 3081 || | || || || | || |||| | || ||||| || || | |||||| | || | Sbjct 2857 GGTTTCCGTTGCTGCCATCTCAAAAAC-ATTTGGACTGCTCCGCTTCCTCCTGAGACTGA 2799 Query 3082 AACATCAGAGACTATGACCACTGGCGCTACGTCTATTGATATTATGGGCCTGCAAGCTGC 3141 || ||||| ||| | || |||||||| |||||||| ||||||||||| Sbjct 2798 GCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGC 2739 Query 3142 TTATGCTAAATTGCACACCCAACAAGAACGTGACTACTTCATGACTCGCTATCGCGATAT 3201 ||||||||| ||||| || | ||||||||||| ||||||||| || || | ||| | Sbjct 2738 TTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGT 2679 Query 3202 TATGAAAGACTTCGGAGGTCACACCTCCTATGACGGTGATAACCGTCCTCTGCTGCTTAT 3261 ||| || |||||| | ||||| ||||||| ||| ||||||||| | || | || Sbjct 2678 TATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCAT 2619 Query 3262 GCGCTCTGAATTTTGGGCCTCTGGCTATGACGTCGACGGTACTGACCAATCCTCTTTAGG 3321 ||||||| | | ||||| ||||||||||| || || || ||||||||| | || ||||| Sbjct 2618 GCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGG 2559 Query 3322 TCAGTTCTCCGGTCGCGTCCAACAAACATTCAATCACAAAGTACCTCGCTTCTATGTACC 3381 ||||| || ||||| || ||||| || | || || || || || |||| ||| || Sbjct 2558 CCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCC 2499 Query 3382 TGAACACGGCGTCATTATGACTCTCGCCGTTACTCGCTTCCCTCCTACT--CATGAAATG 3439 ||| || ||| || | ||||| || || ||| || || |||||| | ||| Sbjct 2498 TGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA-- 2441 Query 3440 GAGATGCACTATCTTGTCGGTAAAGAATCTTTAACCTATACCGACCTCGCCTGCGACCCT 3499 ||||| || || ||| || ||||| |||| || |||||||| | || |||||||| Sbjct 2440 GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCT 2381 Query 3500 GCTCT-TATGGCTAACCTGCCTCCGCGCGAAGTATCCCTTAAGGAATTCTTCCACTCCTC 3558 | | | |||||| ||| |||| ||||| ||| | || | ||||| | |||| | || Sbjct 2380 GTTTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCC-GTTCTG 2323 Query 3559 GCCGGACTCCGCT---AAGTTCAAAATTGCCGAGGGCCAATGGTATCG-CACGCAGCCT- 3613 | || || || ||||| || ||||| ||||| || |||||||| | || |||| Sbjct 2322 G--TGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGC-GCCTT 2266 Query 3614 -GACCGCGTCGCATTCCCTTATAACGCACTTGACGGCTTTCCTTTCTACTC-TGCTCTGC 3671 | | || | | ||||| || ||||| ||||| || ||| | || | | || Sbjct 2265 CGTATGTTTCTCCT--GCTTATCACCTTCTTGAAGGCTTCCCATTC-ATTCAGGAACCGC 2209 Query 3672 CGTCTACTGACTTAAAACAACGTGTCCTAGTTAACACTGATAACTACGACGAAATCTTTC 3731 | ||| ||| || || |||| || || || | || | || ||| | || | Sbjct 2208 CTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCC 2149 Query 3732 AGTCTATGCAACTCGCACACTGGAATATGCAAACTAAATTTAATACTACCGTCTATAGAC 3791 |||| | || | || ||||||| || |||||||||| ||||| ||| | Sbjct 2148 AGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCA 2089 Query 3792 ATATGCCTACGACTCGTGATTCAATCATGACGTC 3825 || |||| || ||||| |||||||||||||| || Sbjct 2088 ATCTGCCGACCACTCGCGATTCAATCATGACTTC 2055 Score = 203 bits (224), Expect = 1e-48 Identities = 538/808 (67%), Gaps = 44/808 (5%) Strand=Plus/Minus Query 4138 TAATCAGGTCTTCTCCGTCTGTGCTCACATCACATCTGACGTGGACCCTAAATATATTGC 4197 ||||||||| | || || ||||| | || | | ||| | |||||||||| | |||| Sbjct 1734 TAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC 1675 Query 4198 GTGCCTCGTTCGCTTTGAGGTCACTGCTGGTACCACTCCTACCGCTATGCCTCCTGTCTA 4257 || | |||||||||||| || | | | | ||| | || | || ||| ||| Sbjct 1674 CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTAC--CCTC----CCGACTGCCTA 1621 Query 4258 TGATGCTTACCCTATCGCTGGTTACTATGACGCTGGCTCTTATACTGTTGAAGACTGCGC 4317 ||||| ||| ||| | | |||| | |||| | ||| | |||||| || | ||||| | Sbjct 1620 TGATGTTTATCCTTTGGATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGT 1561 Query 4318 TACTATT--CCTACTCACGCTGTCTCTTCTGGCAACGATGTATATGTCGGCCTTATGCTT 4375 |||||| | | || | | | | | ||||| |||| ||||| || | ||| || Sbjct 1560 GACTATTGACGTCCTTCCCCGTACGC--CGGGCAATAATGTTTATGTTGGTTTCATGGTT 1503 Query 4376 TTCTCTCGCATGTGGCCCGTTGCAAAACTATCCGGTATCGCTTCCCTTAATCAGGTAAAC 4435 | ||| | | ||| | | ||| ||| | | ||| || |||||||| | Sbjct 1502 TGGTCTAACTTTA---CCGCTACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGTTATT 1446 Query 4436 AAGGAAGTAACCGTTCTCCAACCTCTTAAATAAGGT-ATTCTCTATGTTTGGTGCAATCG 4494 || || | | |||||| || ||||| | |||| ||| |||||||||||| || | Sbjct 1445 AAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATT---TATGTTTGGTGCTATTG 1389 Query 4495 CTGGCGGTATCGCCTCATCTCTTGCTGGCGGACTCATCAACAAAGCCTTTGGGGGCGGTC 4554 |||||||||| || || |||||||||| || ||| ||| ||||| ||||||| Sbjct 1388 CTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTC 1329 Query 4555 AATCCGCCTCCTCTACTGGCGTTCAAGGTGATGTCCTCGCTTC---TGACAATAACGTA- 4610 || ||| |||| |||| ||||||||||||| || ||| | | |||||| ||| Sbjct 1328 AAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAG 1269 Query 4611 --ATCGGTGCTAATGATGCTGGTATCAAATCCGCTATTCAAGGCTCTAATCCACCCAATG 4668 || || |||||||||||| ||||| || ||||||||||||||| || || Sbjct 1268 GCATGGG------TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACC 1215 Query 4669 GCCAACAAGCTGCTCCCAATGCTATTTCGGGCGTTCTCGCTGACACTGGCAAA-GACGCC 4727 | | || | || | | | |||| || | | | ||| | |||| ||| ||| | Sbjct 1214 CTGATGAGGCCGTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACTTC 1155 Query 4728 CT--ATCTTCAAT-CA--CTGGC---GCTGGCGT---TAATAAACTTATGGAAAAAATCG 4776 | | | | | || ||||| ||| ||| | |||| | | || | | Sbjct 1154 TTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTG 1095 Query 4777 GACTATCT---AAAACTGCTGCTGATAAAGGCAAGGACACAAAGGATTATCTTGCTTCTG 4833 |||| | || |||| ||||||||||| ||||| || |||||||||||| ||| Sbjct 1094 GACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTG 1035 Query 4834 CATTCCCCGACCTCAACCCGTGGGAACGTGCTGGCGCTGGTGCTTCGTCTGCTGGCATGG 4893 |||| || || || || | ||||| |||||||| |||| |||||| |||||||| |||| Sbjct 1034 CATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG 975 Query 4894 TTGACGCTGGCTTCCAAAACCAAAAAGA 4921 ||||||| || || | || |||||||| Sbjct 974 TTGACGCCGGATTTGAGAATCAAAAAGA 947 Score = 167 bits (184), Expect = 8e-38 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 5013 TCCCGGCAAAATACTAAGGATGCTGTCTATGCTCAAAACGAGATGCTCGAATATAACCAA 5072 || || || ||||| || || || ||||| ||||| |||||||| | ||| | || Sbjct 855 TCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAG 796 Query 5073 AAAGAATCTATGTCACGCGTTGGCTCTATTCTCGAAAACACAAGCCTCACCAAACAACAA 5132 || || |||| | ||||||| |||||| | |||||||| | || |||| ||||| Sbjct 795 AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAG 736 Query 5133 CAAACTTCTGAAATTATGCGGCAGATGCTTACTCAAGCTCAAACCGCAGGTCAACATTTT 5192 || ||| || |||||||| || |||||||||||||||||||| || ||||| ||||| Sbjct 735 CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTT 676 Query 5193 ACAAATGACCAAATCAAAGAACTTACACGAAAAGTTGGTGCTGATATTGA 5242 || |||||||||||||||||| | || || || ||| ||||||| |||| Sbjct 675 ACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17442302738145