Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq1011 105 4e-19 >seq1011 Length=14871 Score = 105 bits (116), Expect = 4e-19 Identities = 109/140 (78%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 6948 GCATCCACACCAATGTGCGCTTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGG 7007 ||||| ||||||||||| || |||||||| || |||||||| || |||||||||||||| Sbjct 10245 GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGA 10186 Query 7008 TGCATCTCTGGGTCACGCTTGCCGCT-GCCATTCTTGGTCGAACTGGGCGCGGCAATCAG 7066 |||||||| || || || |||| ||| |||||||| || ||||| || |||| | Sbjct 10185 TGCATCTCCGGATCGCG-TTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAT 10127 Query 7067 CGAGGCGTCGACCACCGTGC 7086 | ||| || |||| |||| Sbjct 10126 GGTGGCATCCACCAAAGTGC 10107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27326722279360